# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gtdA	251	0.2069	c.55.1.13,c.55.1.13	135634,135635
2aa4A	289	0.2735	c.55.1.10,c.55.1.10	126465,126466
2r6hA	290	0.6439		
2ap1A	327	0.7896	c.55.1.10,c.55.1.10	127108,127109
2e2oA	299	1.340		
2gupA	292	1.796	c.55.1.10,c.55.1.10	135744,135745
1sz2A	332	2.997	c.55.1.7	112169
2h3gX	268	3.595		
2ewsA	287	5.484	c.55.1.14	146991
3htvA	310	5.754		
1xc3A	302	5.863	c.55.1.10,c.55.1.10	115102,115103
2qm1A	326	6.036		
3gg4A	554	6.060		
3bexA	249	6.240	c.55.1.13,c.55.1.13	155198,155199
2zf5O	497	6.781		
3lm2A	226	6.784		
2q8nA	460	8.165		
1woqA	267	8.529	c.55.1.10,c.55.1.10	109462,109463
3hi0A	508	9.058		
3gbtA	504	9.356		
3l0qA	554	12.42		
2f9wA	271	13.36	c.55.1.13,c.55.1.13	133174,133175
3brqA	296	13.84		
1zbsA	291	14.06	c.55.1.5,c.55.1.5	124870,124871
3gybA	280	14.20		
3bilA	348	14.80		
2bmwA	304	14.99	b.43.4.2,c.25.1.1	128815,128816
3flcO	518	16.04		
3ll3A	504	16.13		
3mcpA	366	17.98		
1zc6A	305	20.70	c.55.1.5,c.55.1.5	124888,124889
3gv0A	288	24.64		
2d4wA	504	25.63		
3ezwA	526	26.28		
2uytA	489	29.77		
1xhcA	367	29.87	c.3.1.5,c.3.1.5,d.87.1.1	115292,115293,115294
2itmA	484	30.10		
2qdxA	257	30.40		
2ch5A	347	31.37	c.55.1.5,c.55.1.5	130453,130454
3h3nO	506	32.72		
2w40A	503	32.82		
1r59O	505	33.61	c.55.1.4,c.55.1.4	111697,111698
3h46O	506	33.82		
2bgiA	272	34.71		
3k4hA	292	35.19		
1glcG	501	35.96	c.55.1.4,c.55.1.4	33519,33520
1a8pA	258	38.99	b.43.4.2,c.25.1.1	25654,31544
3ifrA	508	43.89		
3d7eO	505	44.65		
2o56A	407	46.45		
1m1nB	522	48.78	c.92.2.3	78418
3h6eA	482	49.30		
1wuiS	267	52.87	e.19.1.1	121290
2q2rA	373	54.59		
1u6zA	513	55.54	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
1fdrA	248	57.03	b.43.4.2,c.25.1.1	25653,31543
2q01A	497	58.03		
3irsA	291	64.92		
3c3kA	285	65.04		
2zo9B	274	65.09	d.159.1.11	154714
3hz6A	511	67.08		
2qzsA	485	70.26		
1q1rA	431	70.90	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
2h88C	140	71.54		
3ctpA	330	73.23		
2eixA	243	73.88		
3lrxA	158	73.91		
3lyuA	142	76.68		
1z6rA	406	83.12	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1xwfA	431	83.80	c.2.1.4,c.23.12.3	122392,122393
2w9xA	366	84.35		
1krhA	338	84.58	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
3cs3A	277	86.02		
2e9xD	223	88.25	a.278.1.4,d.344.1.3	146744,146745
2hoeA	380	88.65	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
3f9mA	470	88.99