# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aa4A 289 0.08015 c.55.1.10,c.55.1.10 126465,126466 2ap1A 327 0.1518 c.55.1.10,c.55.1.10 127108,127109 2gtdA 251 0.1544 c.55.1.13,c.55.1.13 135634,135635 2h3gX 268 0.4966 2e2oA 299 0.5559 2hoeA 380 0.5619 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1woqA 267 0.5645 c.55.1.10,c.55.1.10 109462,109463 2gupA 292 0.6698 c.55.1.10,c.55.1.10 135744,135745 1zc6A 305 0.6757 c.55.1.5,c.55.1.5 124888,124889 3ezwA 526 1.104 2r6hA 290 1.409 3hi0A 508 1.638 1bu6O 501 1.643 c.55.1.4,c.55.1.4 33499,33500 1zbsA 291 1.915 c.55.1.5,c.55.1.5 124870,124871 3htvA 310 2.021 2zf5O 497 2.855 1sz2A 332 2.901 c.55.1.7 112169 3lm2A 226 2.967 3gg4A 554 2.972 2w40A 503 3.104 1glcG 501 3.652 c.55.1.4,c.55.1.4 33519,33520 2ch5A 347 3.745 c.55.1.5,c.55.1.5 130453,130454 1z6rA 406 3.845 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3mcpA 366 3.939 3flcO 518 4.461 3bexA 249 4.749 c.55.1.13,c.55.1.13 155198,155199 2qm1A 326 5.161 2ivnA 330 5.192 3ifrA 508 5.406 3l0qA 554 6.045 3ll3A 504 6.843 2ewsA 287 7.632 c.55.1.14 146991 2q01A 497 8.550 2itmA 484 9.264 2f9wA 271 9.644 c.55.1.13,c.55.1.13 133174,133175 2d4wA 504 10.27 2qdxA 257 10.70 1xc3A 302 11.18 c.55.1.10,c.55.1.10 115102,115103 3h46O 506 11.93 3d7eO 505 12.94 2eixA 243 13.79 1wuiS 267 14.12 e.19.1.1 121290 3f9mA 470 14.31 1r59O 505 15.14 c.55.1.4,c.55.1.4 111697,111698 3gbtA 504 16.19 3h3nO 506 16.25 1u6zA 513 16.58 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1t6cA 315 16.61 c.55.1.8,c.55.1.8 106558,106559 3mdqA 315 16.86 3hz6A 511 18.73 2q2rA 373 21.24 1a8pA 258 21.85 b.43.4.2,c.25.1.1 25654,31544 2rjoA 332 23.58 3i8bA 515 23.91 3ljkA 543 25.21 2uytA 489 26.79 1bg4A 302 31.23 c.1.8.3 28806 3cj1A 456 31.81 2ok8A 316 33.19 3h6eA 482 35.17 3bp8A 406 46.04 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1zxoA 291 46.96 c.55.1.5,c.55.1.5 125784,125785 3cs3A 277 49.53 3lyuA 142 49.80 2ja2A 498 50.92 1xyzA 347 53.20 c.1.8.3 28804 2qzsA 485 57.67 3lo8A 311 59.72 1to2E 281 59.82 c.41.1.1 112595 2q8nA 460 62.23 2dxnA 274 63.57 d.159.1.11 146605 1xwfA 431 64.15 c.2.1.4,c.23.12.3 122392,122393 3lrxA 158 70.20 3ef6A 410 71.29 2bgiA 272 75.20 3aapA 353 75.65 3c0bA 334 75.83 2bmwA 304 78.68 b.43.4.2,c.25.1.1 128815,128816 3iwaA 472 78.81 1ig8A 486 79.32 c.55.1.3,c.55.1.3 64746,64747 2qgnA 322 81.12 1fdrA 248 81.84 b.43.4.2,c.25.1.1 25653,31543 1u0fA 564 88.10 c.80.1.2 112912