# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gtdA 251 0.07002 c.55.1.13,c.55.1.13 135634,135635 2ap1A 327 0.2336 c.55.1.10,c.55.1.10 127108,127109 1sz2A 332 0.6651 c.55.1.7 112169 2h3gX 268 0.7147 2ewsA 287 0.8067 c.55.1.14 146991 2aa4A 289 0.8421 c.55.1.10,c.55.1.10 126465,126466 2e2oA 299 0.8778 3htvA 310 1.373 2r6hA 290 2.172 3gg4A 554 2.425 1xc3A 302 2.523 c.55.1.10,c.55.1.10 115102,115103 2qm1A 326 3.001 1zc6A 305 3.938 c.55.1.5,c.55.1.5 124888,124889 2gupA 292 4.894 c.55.1.10,c.55.1.10 135744,135745 1glcG 501 5.063 c.55.1.4,c.55.1.4 33519,33520 3l0qA 554 5.106 3lm2A 226 5.187 3flcO 518 5.879 3bexA 249 6.107 c.55.1.13,c.55.1.13 155198,155199 2zf5O 497 6.304 3gbtA 504 8.055 3ezwA 526 8.332 2itmA 484 9.586 3hi0A 508 9.742 1zbsA 291 9.859 c.55.1.5,c.55.1.5 124870,124871 3ll3A 504 10.73 2uytA 489 11.22 3mcpA 366 12.01 2w40A 503 12.05 3h46O 506 12.19 3h3nO 506 12.42 2qdxA 257 12.43 3d7eO 505 14.33 2hoeA 380 14.91 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2q8nA 460 16.00 1r59O 505 16.00 c.55.1.4,c.55.1.4 111697,111698 2ivnA 330 17.76 3bilA 348 18.15 3gybA 280 18.68 2ch5A 347 18.73 c.55.1.5,c.55.1.5 130453,130454 3ifrA 508 19.39 3epqA 302 19.87 2f9wA 271 20.00 c.55.1.13,c.55.1.13 133174,133175 1woqA 267 24.50 c.55.1.10,c.55.1.10 109462,109463 1z6rA 406 24.59 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1q1rA 431 28.58 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1czaN 917 30.13 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1ig8A 486 33.73 c.55.1.3,c.55.1.3 64746,64747 2xdqA 460 34.75 1wuiS 267 34.94 e.19.1.1 121290 1xwfA 431 35.99 c.2.1.4,c.23.12.3 122392,122393 2d4wA 504 36.64 1a8pA 258 38.53 b.43.4.2,c.25.1.1 25654,31544 3gv0A 288 42.02 1xhcA 367 44.06 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1vdeA 454 44.20 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 2q2rA 373 46.85 2v3aA 384 48.32 1bu6O 501 48.82 c.55.1.4,c.55.1.4 33499,33500 3brqA 296 51.55 2o56A 407 51.83 3h6eA 482 55.08 2cduA 452 58.82 3f9mA 470 59.86 2qzsA 485 60.76 3c0bA 334 61.73 1m1nB 522 63.86 c.92.2.3 78418 1sc6A 404 66.15 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2bt9A 90 66.39 3hz6A 511 68.00 1gdhA 320 68.95 c.2.1.4,c.23.12.1 30095,31355 1x42A 232 70.45 c.108.1.1 121677 1u6zA 513 74.15 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1v4sA 455 75.93 c.55.1.3,c.55.1.3 100309,100310 3ef6A 410 77.96 1yqzA 438 79.94 3lyuA 142 80.55 2tmdA 729 87.61 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 3k4hA 292 88.98