# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gtdA 251 0.1344 c.55.1.13,c.55.1.13 135634,135635 2qm1A 326 0.3458 1sz2A 332 0.9076 c.55.1.7 112169 2q8nA 460 1.138 2aa4A 289 1.213 c.55.1.10,c.55.1.10 126465,126466 2e2oA 299 1.229 1zc6A 305 1.306 c.55.1.5,c.55.1.5 124888,124889 3gg4A 554 1.714 3ezwA 526 1.994 2bmwA 304 2.719 b.43.4.2,c.25.1.1 128815,128816 2gupA 292 2.797 c.55.1.10,c.55.1.10 135744,135745 3l0qA 554 2.817 2ap1A 327 2.984 c.55.1.10,c.55.1.10 127108,127109 2ivnA 330 3.318 3ll3A 504 3.701 2ewsA 287 3.782 c.55.1.14 146991 2hoeA 380 4.130 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2ch5A 347 4.216 c.55.1.5,c.55.1.5 130453,130454 2h3gX 268 4.460 1ig8A 486 4.808 c.55.1.3,c.55.1.3 64746,64747 2r6hA 290 4.966 3htvA 310 5.845 1woqA 267 6.741 c.55.1.10,c.55.1.10 109462,109463 3h3nO 506 6.814 2d4wA 504 7.327 1z6rA 406 7.357 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3hi0A 508 7.444 3bblA 287 8.224 2zf5O 497 8.411 3mcpA 366 9.582 1glcG 501 9.760 c.55.1.4,c.55.1.4 33519,33520 3bexA 249 9.784 c.55.1.13,c.55.1.13 155198,155199 3c0bA 334 9.938 2qdxA 257 10.43 3gv0A 288 10.45 1xc3A 302 11.01 c.55.1.10,c.55.1.10 115102,115103 1vdeA 454 11.17 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1zbsA 291 11.23 c.55.1.5,c.55.1.5 124870,124871 3djaA 579 13.05 3lm2A 226 13.24 3bp8A 406 14.21 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1e3jA 352 14.80 b.35.1.2,c.2.1.1 24765,29781 2w9xA 366 15.01 1huxA 270 16.99 c.55.1.5 61278 1a8pA 258 18.54 b.43.4.2,c.25.1.1 25654,31544 2bgiA 272 18.70 1ile 821 18.73 2w40A 503 18.84 3hz6A 511 21.51 1ogiA 303 23.24 b.43.4.2,c.25.1.1 92914,92915 2w2gA 264 23.93 3h46O 506 24.19 2uytA 489 24.55 2piaA 321 25.21 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3cetA 334 25.47 1r59O 505 25.61 c.55.1.4,c.55.1.4 111697,111698 3gbgA 276 26.49 3k0fA 519 27.82 3ga7A 326 31.87 2f9wA 271 32.28 c.55.1.13,c.55.1.13 133174,133175 1u6zA 513 33.28 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3g02A 408 33.69 1bu6O 501 35.25 c.55.1.4,c.55.1.4 33499,33500 2cunA 410 38.28 1smlA 269 39.90 d.157.1.1 42053 2v6kA 214 40.44 1e0tA 470 41.81 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1fdrA 248 42.36 b.43.4.2,c.25.1.1 25653,31543 2pia 321 44.59 1mwmA 320 45.54 c.55.1.1,c.55.1.1 79580,79581 1t6cA 315 46.63 c.55.1.8,c.55.1.8 106558,106559 3cj1A 456 47.30 1w34A 304 47.94 b.43.4.2,c.25.1.1 120620,120621 3ephA 409 49.35 3kljA 385 49.37 3h6eA 482 51.16 2eu9A 355 53.21 2tmdA 729 53.89 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1u04A 771 55.57 b.34.14.1,c.55.3.10 107539,107540 2o56A 407 55.70 2bcjB 340 55.95 b.69.4.1 128289 3ifrA 508 56.94 3flcO 518 57.10 1czaN 917 57.46 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2fgeA 995 58.88 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1jb9A 316 58.93 b.43.4.2,c.25.1.1 62840,62841 3k09A 519 60.02 2bg9A 370 60.04 2e87A 357 61.69 2p36A 335 62.52 1oi7A 288 63.09 c.2.1.8,c.23.4.1 87049,87050 3gbtA 504 63.63 2gblA 519 65.23 c.37.1.11,c.37.1.11 134911,134912 3hjhA 483 69.57 1qh8A 478 70.86 c.92.2.3 35633 3bilA 348 71.84 2g5fA 450 72.20 d.161.1.1 134654 1j6pA 418 73.80 b.92.1.4,c.1.9.9 77089,77090 2b78A 385 74.69 b.122.1.9,c.66.1.51 128025,128026 2qgnA 322 75.08 3ls2A 280 75.14 3irsA 291 76.23 1m1nB 522 77.61 c.92.2.3 78418 2yhx 457 77.98 2rc5A 314 78.82 2btfA 375 81.07 c.55.1.1,c.55.1.1 33429,33430 2vunA 386 81.80 3d7rA 326 82.23 1idkA 359 86.40 b.80.1.2 28025