# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gtdA 251 0.06907 c.55.1.13,c.55.1.13 135634,135635 2e2oA 299 0.3408 2ap1A 327 0.3600 c.55.1.10,c.55.1.10 127108,127109 1sz2A 332 0.4332 c.55.1.7 112169 2h3gX 268 0.7830 2aa4A 289 0.7893 c.55.1.10,c.55.1.10 126465,126466 3htvA 310 1.087 2r6hA 290 1.087 2ewsA 287 1.540 c.55.1.14 146991 1xc3A 302 2.329 c.55.1.10,c.55.1.10 115102,115103 3gg4A 554 2.607 2qm1A 326 2.714 2gupA 292 4.237 c.55.1.10,c.55.1.10 135744,135745 1zc6A 305 4.611 c.55.1.5,c.55.1.5 124888,124889 3lm2A 226 5.038 3bexA 249 5.575 c.55.1.13,c.55.1.13 155198,155199 3l0qA 554 6.087 2zf5O 497 6.796 1glcG 501 6.951 c.55.1.4,c.55.1.4 33519,33520 3flcO 518 7.065 3gbtA 504 8.973 3ezwA 526 9.526 3hi0A 508 9.568 2uytA 489 10.90 3ll3A 504 11.64 3epqA 302 12.10 1zbsA 291 12.15 c.55.1.5,c.55.1.5 124870,124871 2w40A 503 12.83 2itmA 484 14.87 3d7eO 505 14.89 3h46O 506 15.26 2qdxA 257 15.32 3h3nO 506 15.49 2hoeA 380 15.57 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2f9wA 271 16.16 c.55.1.13,c.55.1.13 133174,133175 3gybA 280 16.45 3bilA 348 17.36 1ig8A 486 17.50 c.55.1.3,c.55.1.3 64746,64747 1r59O 505 19.89 c.55.1.4,c.55.1.4 111697,111698 3mcpA 366 22.67 3ifrA 508 22.92 2ch5A 347 23.11 c.55.1.5,c.55.1.5 130453,130454 2q8nA 460 24.34 2ivnA 330 26.95 2d4wA 504 29.37 1a8pA 258 29.87 b.43.4.2,c.25.1.1 25654,31544 1woqA 267 29.89 c.55.1.10,c.55.1.10 109462,109463 3gv0A 288 32.33 1czaN 917 32.59 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1q1rA 431 33.35 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3brqA 296 34.95 1xwfA 431 35.78 c.2.1.4,c.23.12.3 122392,122393 2q2rA 373 36.17 3k4hA 292 40.77 1z6rA 406 43.02 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1sc6A 404 44.71 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1wuiS 267 45.81 e.19.1.1 121290 3f9mA 470 46.31 1bu6O 501 47.48 c.55.1.4,c.55.1.4 33499,33500 1t6cA 315 51.10 c.55.1.8,c.55.1.8 106558,106559 2xdqA 460 51.89 2bmwA 304 53.62 b.43.4.2,c.25.1.1 128815,128816 3h6eA 482 55.60 1vdeA 454 56.32 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1xhcA 367 57.50 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2tmdA 729 60.57 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1x42A 232 66.02 c.108.1.1 121677 3jvpA 572 66.17 2cduA 452 67.95 3ingA 325 68.52 1v4sA 455 73.10 c.55.1.3,c.55.1.3 100309,100310 2piaA 321 75.53 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3hz6A 511 77.88 3cs3A 277 77.93 1t8sA 484 79.03 c.56.2.1 106679 2h88C 140 82.60 3c0bA 334 85.39 2qzsA 485 86.51 3ef6A 410 87.49 1gdhA 320 88.09 c.2.1.4,c.23.12.1 30095,31355