# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gtdA	251	0.1319	c.55.1.13,c.55.1.13	135634,135635
2ap1A	327	0.1879	c.55.1.10,c.55.1.10	127108,127109
2aa4A	289	0.2354	c.55.1.10,c.55.1.10	126465,126466
2e2oA	299	0.6676		
2r6hA	290	0.7192		
1sz2A	332	0.8797	c.55.1.7	112169
3htvA	310	1.107		
2h3gX	268	1.129		
2qm1A	326	1.955		
1zc6A	305	2.035	c.55.1.5,c.55.1.5	124888,124889
2ewsA	287	2.190	c.55.1.14	146991
2gupA	292	2.614	c.55.1.10,c.55.1.10	135744,135745
1woqA	267	2.690	c.55.1.10,c.55.1.10	109462,109463
1xc3A	302	2.757	c.55.1.10,c.55.1.10	115102,115103
3bexA	249	3.083	c.55.1.13,c.55.1.13	155198,155199
1zbsA	291	4.146	c.55.1.5,c.55.1.5	124870,124871
2ch5A	347	6.556	c.55.1.5,c.55.1.5	130453,130454
3lm2A	226	8.171		
2hoeA	380	9.123	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
2q8nA	460	9.599		
3gg4A	554	10.40		
3bilA	348	10.81		
3hi0A	508	11.21		
3flcO	518	14.97		
3mcpA	366	15.36		
1t6cA	315	15.71	c.55.1.8,c.55.1.8	106558,106559
3ezwA	526	16.93		
2f9wA	271	17.10	c.55.1.13,c.55.1.13	133174,133175
3epqA	302	18.75		
2bmwA	304	19.51	b.43.4.2,c.25.1.1	128815,128816
1xwfA	431	19.53	c.2.1.4,c.23.12.3	122392,122393
3gv0A	288	19.58		
2qdxA	257	23.57		
1vdeA	454	25.13	b.86.1.2,d.95.2.2,d.95.2.2	28378,40581,40582
3gybA	280	25.22		
1ig8A	486	29.08	c.55.1.3,c.55.1.3	64746,64747
1z6rA	406	29.65	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1glcG	501	30.12	c.55.1.4,c.55.1.4	33519,33520
3f9mA	470	33.62		
2q2rA	373	34.10		
3ctpA	330	38.68		
3ll3A	504	40.53		
3brqA	296	41.74		
3h3nO	506	44.08		
3h46O	506	44.24		
1u6zA	513	45.34	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
2q01A	497	46.40		
3d7eO	505	47.93		
1r59O	505	52.72	c.55.1.4,c.55.1.4	111697,111698
3cj1A	456	53.48		
3ifrA	508	55.00		
3l0qA	554	56.86		
1huxA	270	58.39	c.55.1.5	61278
2o56A	407	58.60		
3hnnA	262	59.25		
3k4hA	292	59.33		
2jkcA	538	59.42		
2qgnA	322	60.57		
3c3kA	285	61.32		
1m1nB	522	62.52	c.92.2.3	78418
2h88C	140	63.14		
2ivnA	330	64.40		
2fnoA	248	66.80	a.45.1.1,c.47.1.5	133821,133822
1a8pA	258	67.63	b.43.4.2,c.25.1.1	25654,31544
3c0bA	334	68.58		
2bgiA	272	68.98		
2o20A	332	69.92		
2uytA	489	71.03		
1krhA	338	71.15	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1rec	201	72.75		
1bu6O	501	73.78	c.55.1.4,c.55.1.4	33499,33500
3gbtA	504	75.06		
2ijqA	161	75.75	a.246.2.1	137481
2p36A	335	77.40		
2w40A	503	77.51		
2yhx	457	81.56		
2weuA	511	89.11