# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gtdA	251	0.2438	c.55.1.13,c.55.1.13	135634,135635
2ap1A	327	0.3381	c.55.1.10,c.55.1.10	127108,127109
2r6hA	290	0.9688		
2e2oA	299	1.277		
2aa4A	289	1.362	c.55.1.10,c.55.1.10	126465,126466
2ewsA	287	2.679	c.55.1.14	146991
1sz2A	332	2.709	c.55.1.7	112169
3htvA	310	3.138		
2qm1A	326	4.358		
3gg4A	554	5.174		
2gupA	292	5.250	c.55.1.10,c.55.1.10	135744,135745
2h3gX	268	5.477		
1xc3A	302	6.105	c.55.1.10,c.55.1.10	115102,115103
1zc6A	305	6.598	c.55.1.5,c.55.1.5	124888,124889
3lm2A	226	7.876		
3bexA	249	8.325	c.55.1.13,c.55.1.13	155198,155199
3flcO	518	13.11		
3ezwA	526	13.77		
2q8nA	460	14.65		
2zf5O	497	15.20		
2hoeA	380	15.55	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
3bilA	348	18.14		
3gbtA	504	19.29		
1xwfA	431	19.34	c.2.1.4,c.23.12.3	122392,122393
3l0qA	554	19.91		
3ifrA	508	20.76		
2w40A	503	21.43		
3ll3A	504	21.84		
1zbsA	291	22.89	c.55.1.5,c.55.1.5	124870,124871
1glcG	501	23.31	c.55.1.4,c.55.1.4	33519,33520
2qdxA	257	24.27		
3h46O	506	24.47		
2f9wA	271	25.39	c.55.1.13,c.55.1.13	133174,133175
3gybA	280	26.04		
3d7eO	505	26.90		
1woqA	267	27.11	c.55.1.10,c.55.1.10	109462,109463
3h3nO	506	27.93		
3mcpA	366	28.58		
2ch5A	347	30.06	c.55.1.5,c.55.1.5	130453,130454
3hi0A	508	30.35		
3epqA	302	30.62		
2d4wA	504	33.00		
2itmA	484	33.08		
2uytA	489	36.48		
2h88C	140	36.52		
1r59O	505	38.62	c.55.1.4,c.55.1.4	111697,111698
1z6rA	406	40.59	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
3gv0A	288	43.67		
2o56A	407	44.77		
2q01A	497	45.58		
1q1rA	431	46.35	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
2q2rA	373	50.69		
2p36A	335	52.02		
1m1nB	522	60.16	c.92.2.3	78418
1xhcA	367	62.15	c.3.1.5,c.3.1.5,d.87.1.1	115292,115293,115294
1a8pA	258	63.10	b.43.4.2,c.25.1.1	25654,31544
3lyuA	142	63.47		
3brqA	296	67.71		
1v4sA	455	69.87	c.55.1.3,c.55.1.3	100309,100310
2w9xA	366	75.05		
3f9mA	470	76.12		
3lrxA	158	78.31		
1rec	201	78.56		
1bu6O	501	83.53	c.55.1.4,c.55.1.4	33499,33500
1wuiS	267	85.46	e.19.1.1	121290
2v3aA	384	85.71		
2e9xD	223	87.68	a.278.1.4,d.344.1.3	146744,146745
2eixA	243	89.56