# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aa4A 289 0.05642 c.55.1.10,c.55.1.10 126465,126466 1zc6A 305 0.7400 c.55.1.5,c.55.1.5 124888,124889 2gtdA 251 0.8966 c.55.1.13,c.55.1.13 135634,135635 2ap1A 327 1.175 c.55.1.10,c.55.1.10 127108,127109 2h3gX 268 1.421 3lm2A 226 1.728 2e2oA 299 1.768 1woqA 267 2.888 c.55.1.10,c.55.1.10 109462,109463 1sz2A 332 2.940 c.55.1.7 112169 2ewsA 287 3.295 c.55.1.14 146991 2hoeA 380 3.984 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1zbsA 291 4.532 c.55.1.5,c.55.1.5 124870,124871 2ch5A 347 4.555 c.55.1.5,c.55.1.5 130453,130454 1bu6O 501 4.717 c.55.1.4,c.55.1.4 33499,33500 3bexA 249 5.200 c.55.1.13,c.55.1.13 155198,155199 3bp8A 406 8.100 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3htvA 310 8.509 1xc3A 302 9.134 c.55.1.10,c.55.1.10 115102,115103 2gupA 292 9.477 c.55.1.10,c.55.1.10 135744,135745 2r6hA 290 10.60 3ezwA 526 10.98 3c0bA 334 13.79 2qm1A 326 13.94 1z6rA 406 14.94 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2ivnA 330 15.74 1wuiS 267 18.84 e.19.1.1 121290 1okjA 251 19.93 c.55.1.9,c.55.1.9 103998,103999 3h6eA 482 20.23 3mcpA 366 20.47 1a8pA 258 21.70 b.43.4.2,c.25.1.1 25654,31544 1r59O 505 22.71 c.55.1.4,c.55.1.4 111697,111698 2q01A 497 24.11 2yhx 457 24.57 1glcG 501 25.16 c.55.1.4,c.55.1.4 33519,33520 2w40A 503 25.85 3f9mA 470 26.01 1t6cA 315 26.72 c.55.1.8,c.55.1.8 106558,106559 2qdxA 257 30.58 3ll3A 504 30.58 3ljkA 543 33.61 1u6zA 513 34.14 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3iwaA 472 37.34 2zf5O 497 40.04 3kljA 385 41.81 2bgiA 272 42.72 3ifrA 508 43.45 2dxnA 274 44.05 d.159.1.11 146605 1v4sA 455 45.31 c.55.1.3,c.55.1.3 100309,100310 2o2cA 613 45.64 2q8nA 460 45.73 3mdqA 315 46.04 2zo9B 274 46.11 d.159.1.11 154714 2gelA 231 50.61 2eixA 243 53.38 2f9wA 271 54.61 c.55.1.13,c.55.1.13 133174,133175 3cerA 343 55.45 1iatA 557 55.92 c.80.1.2 62123 3hjbA 574 57.48 3epqA 302 59.07 3hi0A 508 59.57 2o56A 407 59.82 1bg4A 302 60.43 c.1.8.3 28806 1xhcA 367 61.76 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1u0fA 564 63.81 c.80.1.2 112912 1fdrA 248 65.54 b.43.4.2,c.25.1.1 25653,31543 2itmA 484 67.39 1d7yA 408 74.84 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2yhxA 457 83.01 i.12.1.1 46024 3gbtA 504 84.96 2q2rA 373 89.36 2gqwA 408 89.43