# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aa4A 289 0.08562 c.55.1.10,c.55.1.10 126465,126466 2gtdA 251 0.09590 c.55.1.13,c.55.1.13 135634,135635 2ap1A 327 0.1139 c.55.1.10,c.55.1.10 127108,127109 1woqA 267 0.2873 c.55.1.10,c.55.1.10 109462,109463 2h3gX 268 0.6849 3htvA 310 0.8674 1sz2A 332 0.9573 c.55.1.7 112169 2qm1A 326 0.9852 3bexA 249 1.036 c.55.1.13,c.55.1.13 155198,155199 2gupA 292 1.221 c.55.1.10,c.55.1.10 135744,135745 2r6hA 290 1.349 2hoeA 380 1.401 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2ewsA 287 1.471 c.55.1.14 146991 1zbsA 291 1.474 c.55.1.5,c.55.1.5 124870,124871 3lm2A 226 1.566 2e2oA 299 2.870 3ezwA 526 2.897 1xc3A 302 3.943 c.55.1.10,c.55.1.10 115102,115103 1z6rA 406 4.333 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2ivnA 330 4.445 3flcO 518 5.379 1glcG 501 6.100 c.55.1.4,c.55.1.4 33519,33520 1u6zA 513 6.416 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1zc6A 305 6.788 c.55.1.5,c.55.1.5 124888,124889 2w40A 503 7.972 2q2rA 373 8.610 2f9wA 271 9.704 c.55.1.13,c.55.1.13 133174,133175 2ch5A 347 10.25 c.55.1.5,c.55.1.5 130453,130454 1bu6O 501 11.41 c.55.1.4,c.55.1.4 33499,33500 2zf5O 497 11.90 3bp8A 406 12.21 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3cj1A 456 13.43 3mdqA 315 13.81 3h46O 506 14.68 3gbtA 504 14.96 3epqA 302 16.89 2aw5A 541 16.97 2piaA 321 17.47 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2itmA 484 17.79 1r59O 505 18.27 c.55.1.4,c.55.1.4 111697,111698 2gelA 231 18.31 2q8nA 460 19.41 3h3nO 506 19.44 1okjA 251 19.91 c.55.1.9,c.55.1.9 103998,103999 3ljkA 543 21.60 1jykA 254 21.69 c.68.1.13 67458 3mcpA 366 22.50 3ll3A 504 24.74 1o0sA 605 25.34 c.2.1.7,c.58.1.3 86540,86541 2ok8A 316 25.68 2z1aA 552 26.16 d.114.1.1,d.159.1.2 153927,153928 3hi0A 508 26.66 3f9mA 470 27.16 3i8bA 515 27.68 1t6cA 315 27.79 c.55.1.8,c.55.1.8 106558,106559 3c0bA 334 28.46 2q01A 497 30.74 3ifrA 508 31.05 1yzyA 413 31.92 c.146.1.1 124292 2qdxA 257 34.30 3d7eO 505 38.29 3hjbA 574 39.95 2o56A 407 44.33 2e0cA 409 45.24 1ps9A 671 46.76 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2rjoA 332 47.52 1wuiS 267 47.86 e.19.1.1 121290 3lo8A 311 48.87 1iatA 557 49.20 c.80.1.2 62123 1l6rA 227 50.80 c.108.1.10 77768 1zxoA 291 51.96 c.55.1.5,c.55.1.5 125784,125785 1a8pA 258 53.58 b.43.4.2,c.25.1.1 25654,31544 2b5oA 402 54.09 1jcfA 344 61.43 c.55.1.1,c.55.1.1 62878,62879 1ig8A 486 61.69 c.55.1.3,c.55.1.3 64746,64747 3lp6A 174 62.43 1u0fA 564 63.42 c.80.1.2 112912 3gg4A 554 64.82 3floA 460 72.19 1huxA 270 72.35 c.55.1.5 61278 1f4pA 147 73.11 c.23.5.1 59651 1v4sA 455 75.22 c.55.1.3,c.55.1.3 100309,100310 1w34A 304 76.97 b.43.4.2,c.25.1.1 120620,120621 2zo9B 274 79.25 d.159.1.11 154714 2cxnA 557 81.88 2pia 321 82.28 3h6eA 482 86.13 1ep1B 261 88.60 b.43.4.2,c.25.1.3 25665,31555 3a21A 614 89.50 2o2cA 613 89.83