# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e2oA 299 0.7634 2qm1A 326 0.7846 2gupA 292 0.8011 c.55.1.10,c.55.1.10 135744,135745 2aa4A 289 0.8025 c.55.1.10,c.55.1.10 126465,126466 1sz2A 332 1.446 c.55.1.7 112169 2h3gX 268 1.576 1zbsA 291 1.604 c.55.1.5,c.55.1.5 124870,124871 3bp8A 406 1.766 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3htvA 310 1.776 2hoeA 380 1.940 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1woqA 267 2.158 c.55.1.10,c.55.1.10 109462,109463 3f9mA 470 2.292 1xc3A 302 2.293 c.55.1.10,c.55.1.10 115102,115103 2ap1A 327 2.554 c.55.1.10,c.55.1.10 127108,127109 2ivnA 330 2.683 2gtdA 251 2.727 c.55.1.13,c.55.1.13 135634,135635 3bexA 249 2.797 c.55.1.13,c.55.1.13 155198,155199 1z6rA 406 2.844 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1v4sA 455 2.963 c.55.1.3,c.55.1.3 100309,100310 2ewsA 287 3.142 c.55.1.14 146991 1sazA 381 3.337 c.55.1.2,c.55.1.2 118925,118926 3epqA 302 3.413 2f9wA 271 3.483 c.55.1.13,c.55.1.13 133174,133175 1huxA 270 3.993 c.55.1.5 61278 3mcpA 366 4.092 3lm2A 226 4.391 1ig8A 486 4.515 c.55.1.3,c.55.1.3 64746,64747 3cqyA 370 5.346 1jcfA 344 5.597 c.55.1.1,c.55.1.1 62878,62879 1bu6O 501 5.794 c.55.1.4,c.55.1.4 33499,33500 1u6zA 513 5.805 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3d2fA 675 6.426 3flcO 518 6.569 1t6cA 315 6.631 c.55.1.8,c.55.1.8 106558,106559 1zc6A 305 7.561 c.55.1.5,c.55.1.5 124888,124889 2yhxA 457 7.570 i.12.1.1 46024 2yhx 457 7.614 2zf5O 497 8.142 2ch5A 347 8.147 c.55.1.5,c.55.1.5 130453,130454 3a8yA 392 8.945 2qxlA 658 8.975 3ezwA 526 9.95 1e4fT 419 10.19 c.55.1.1,c.55.1.1 33453,33454 3c0bA 334 10.28 2q2rA 373 10.71 3hz6A 511 11.00 2w40A 503 11.36 3hrgA 257 11.78 3gbtA 504 12.60 3fzhA 381 12.76 1g99A 408 12.85 c.55.1.2,c.55.1.2 33457,33458 1d4xA 375 13.40 c.55.1.1,c.55.1.1 59107,59108 1x3mA 415 13.45 c.55.1.2,c.55.1.2 121664,121665 1glcG 501 13.74 c.55.1.4,c.55.1.4 33519,33520 3h46O 506 13.97 1yuwA 554 14.06 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 3h3nO 506 14.23 1bupA 386 14.30 c.55.1.1,c.55.1.1 33377,33378 3i33A 404 14.48 3khyA 384 14.65 2d4wA 504 14.79 1wuaA 375 14.91 c.55.1.1,c.55.1.1 121281,121282 3gl1A 387 15.26 3mdqA 315 15.34 2btfA 375 15.56 c.55.1.1,c.55.1.1 33429,33430 1qz5A 375 15.79 c.55.1.1,c.55.1.1 96614,96615 1kay 381 16.42 3ll3A 504 16.74 3h1qA 272 17.01 2e1zA 415 17.14 c.55.1.2,c.55.1.2 146631,146632 2fxuA 375 17.44 c.55.1.1,c.55.1.1 134340,134341 3cerA 343 17.77 3d7eO 505 18.75 3gg4A 554 20.10 2w49D 372 22.02 2zgyA 320 22.07 c.55.1.1,c.55.1.1 154425,154426 3cipA 375 22.21 3cetA 334 22.52 2itmA 484 22.64 2uytA 489 23.06 1mwmA 320 23.68 c.55.1.1,c.55.1.1 79580,79581 3aapA 353 25.42 2gelA 231 25.77 3l0qA 554 26.25 1nbwA 607 30.88 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 3i8bA 515 32.32 3h6eA 482 35.48 1zxoA 291 35.86 c.55.1.5,c.55.1.5 125784,125785 3hi0A 508 40.56 1czaN 917 43.77 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2d0oA 610 45.48 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1okjA 251 45.97 c.55.1.9,c.55.1.9 103998,103999 3ifrA 508 51.10 1k8kA 418 66.31 c.55.1.1,c.55.1.1 68305,68306 2gruA 368 75.99 2i7nA 360 81.53 c.55.1.14,c.55.1.14 147547,147548 2i7pA 362 86.34 c.55.1.14,c.55.1.14 147551,147552