PFRMAT SS
TARGET T0628
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0628.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 206
METHOD
MODEL 1
S C 0.740
N C 0.443
A T 0.590
M T 0.553
T T 0.524
A T 0.408
R E 0.672
Y E 0.915
I E 0.940
A E 0.897
I E 0.764
D E 0.378
W T 0.612
G T 0.646
S T 0.659
T T 0.476
N E 0.528
L E 0.687
R E 0.889
A E 0.943
W E 0.957
L E 0.977
Y E 0.955
Q T 0.506
G T 0.927
E T 0.942
E T 0.774
C E 0.657
L E 0.889
E E 0.847
S E 0.819
R E 0.672
Q E 0.633
S C 0.323
E T 0.473
A T 0.540
G T 0.486
V E 0.365
T E 0.474
R E 0.498
L E 0.337
N T 0.508
G T 0.607
R T 0.589
S T 0.495
P H 0.792
A H 0.932
A H 0.956
V H 0.970
L H 0.976
A H 0.968
E H 0.961
I H 0.951
T H 0.912
Q H 0.779
H H 0.647
W H 0.550
R H 0.414
D T 0.607
G T 0.613
A T 0.531
T C 0.509
P E 0.616
V E 0.964
V E 0.976
M E 0.956
A E 0.763
G C 0.383
M T 0.387
V T 0.351
G T 0.629
S T 0.753
N T 0.773
V T 0.667
G E 0.385
W E 0.713
K E 0.712
I E 0.614
A C 0.360
P C 0.401
Y T 0.339
L T 0.360
P C 0.405
L C 0.415
P C 0.494
A C 0.595
A C 0.695
F H 0.611
S H 0.724
D H 0.661
I H 0.751
G H 0.636
Q H 0.543
Q H 0.371
L H 0.294
T E 0.323
A E 0.372
V C 0.541
G C 0.603
D T 0.481
N C 0.426
I E 0.635
W E 0.811
I E 0.832
I E 0.655
P C 0.540
G C 0.526
L C 0.411
C T 0.320
V T 0.345
S T 0.389
R T 0.453
D T 0.442
D C 0.607
N C 0.461
H C 0.436
N T 0.310
V T 0.293
M H 0.316
R H 0.413
G H 0.416
E H 0.926
E H 0.990
T H 0.986
Q H 0.989
L H 0.989
L H 0.991
G H 0.986
A H 0.984
R H 0.953
A H 0.885
L H 0.440
A C 0.510
P T 0.556
S T 0.547
S E 0.433
V E 0.914
Y E 0.985
V E 0.970
M E 0.796
P C 0.393
G T 0.709
T T 0.683
H T 0.612
C T 0.429
K E 0.619
W E 0.865
V E 0.928
L E 0.958
A E 0.926
D E 0.732
R T 0.759
R T 0.745
Q E 0.750
I E 0.862
H E 0.884
D E 0.770
F E 0.659
R E 0.539
T E 0.405
V H 0.459
L H 0.570
T H 0.695
G H 0.906
E H 0.994
L H 0.996
H H 0.999
H H 0.997
L H 0.995
L H 0.993
L H 0.974
Q H 0.886
L H 0.604
S H 0.544
L H 0.489
V H 0.555
G H 0.452
A H 0.392
G C 0.299
L C 0.361
P C 0.397
P T 0.413
Q T 0.428
E T 0.460
T C 0.526
S C 0.732
A H 0.498
A H 0.765
A H 0.771
F H 0.842
A H 0.887
A H 0.887
G H 0.875
L H 0.825
Q H 0.747
R H 0.689
G H 0.661
I C 0.407
N C 0.641
N H 0.599
P H 0.711
A H 0.788
V H 0.876
L H 0.921
P H 0.897
Q H 0.913
L H 0.950
F H 0.983
E H 0.979
V H 0.981
R H 0.989
A H 0.986
S H 0.985
H H 0.967
V H 0.932
L H 0.840
G H 0.437
A T 0.399
L C 0.611
P C 0.790
R H 0.705
E H 0.668
Q H 0.755
V H 0.894
S H 0.906
E H 0.931
F H 0.930
L H 0.937
S H 0.933
G H 0.953
L H 0.965
L H 0.960
I H 0.939
G H 0.947
A H 0.972
E H 0.971
V H 0.974
A H 0.960
T H 0.940
L H 0.907
S H 0.828
D H 0.700
T H 0.602
F T 0.322
A T 0.755
G T 0.812
Q T 0.867
Q T 0.523
A E 0.823
I E 0.989
S E 0.995
L E 0.992
V E 0.930
A C 0.659
G C 0.542
S G 0.467
S G 0.514
L H 0.701
T H 0.946
S H 0.958
R H 0.975
Y H 0.981
Q H 0.980
Q H 0.984
A H 0.990
F H 0.983
A H 0.961
A H 0.946
I H 0.857
G C 0.930
R C 0.897
E C 0.732
V E 0.649
S E 0.817
A E 0.690
V C 0.543
A C 0.715
G H 0.837
D H 0.827
T H 0.868
A H 0.882
F H 0.970
Q H 0.987
T H 0.977
G H 0.975
I H 0.996
R H 0.998
S H 0.998
I H 0.998
A H 0.993
Y H 0.980
A H 0.923
V H 0.791
A C 0.726
N C 0.966
END