PFRMAT SS
TARGET T0628
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0628.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 206
METHOD
MODEL 1
S C 0.667
N C 0.384
A C 0.361
M C 0.411
T C 0.456
A C 0.518
R E 0.604
Y E 0.955
I E 0.984
A E 0.991
I E 0.973
D E 0.691
W C 0.594
G S 0.425
S S 0.391
T S 0.362
N E 0.275
L E 0.467
R E 0.622
A E 0.804
W E 0.840
L E 0.875
Y E 0.737
Q C 0.454
G T 0.642
E T 0.747
E S 0.333
C E 0.580
L E 0.807
E E 0.763
S E 0.740
R E 0.685
Q E 0.551
S E 0.360
E C 0.318
A T 0.323
G T 0.351
V C 0.320
T E 0.451
R E 0.442
L C 0.314
N C 0.613
G T 0.413
R T 0.498
S C 0.282
P H 0.549
A H 0.899
A H 0.954
V H 0.967
L H 0.973
A H 0.975
E H 0.951
I H 0.914
T H 0.845
Q H 0.696
H H 0.606
W H 0.405
R T 0.271
D C 0.356
G S 0.331
A C 0.478
T C 0.470
P E 0.388
V E 0.914
V E 0.976
M E 0.959
A E 0.800
G E 0.487
M E 0.361
V C 0.363
G C 0.282
S C 0.371
N T 0.311
V T 0.319
G T 0.306
W E 0.236
K E 0.363
I E 0.325
A C 0.525
P C 0.413
Y E 0.345
L E 0.389
P C 0.403
L C 0.465
P C 0.713
A C 0.776
A C 0.853
F H 0.715
S H 0.784
D H 0.739
I H 0.791
G H 0.621
Q H 0.439
Q H 0.365
L C 0.334
T C 0.398
A C 0.385
V C 0.595
G C 0.537
D S 0.435
N C 0.371
I E 0.708
W E 0.902
I E 0.903
I E 0.862
P E 0.633
G C 0.438
L C 0.349
C C 0.331
V C 0.348
S C 0.439
R C 0.323
D S 0.392
D S 0.425
N C 0.553
H C 0.591
N C 0.364
V C 0.242
M C 0.330
R C 0.311
G H 0.472
E H 0.823
E H 0.925
T H 0.956
Q H 0.977
L H 0.977
L H 0.970
G H 0.959
A H 0.957
R H 0.940
A H 0.748
L H 0.452
A C 0.552
P C 0.350
S T 0.430
S C 0.390
V E 0.855
Y E 0.947
V E 0.911
M E 0.783
P C 0.421
G S 0.479
T S 0.464
H S 0.285
C C 0.342
K E 0.369
W E 0.724
V E 0.792
L E 0.900
A E 0.729
D E 0.507
R T 0.748
R T 0.562
Q E 0.783
I E 0.942
H E 0.897
D E 0.819
F E 0.668
R E 0.306
T H 0.553
V H 0.671
L H 0.849
T H 0.922
G H 0.924
E H 0.961
L H 0.986
H H 0.991
H H 0.988
L H 0.979
L H 0.951
L H 0.856
Q H 0.666
L H 0.602
S H 0.548
L H 0.519
V H 0.466
G H 0.419
A H 0.358
G H 0.311
L C 0.295
P C 0.409
P C 0.284
Q T 0.291
E C 0.313
T C 0.423
S C 0.628
A H 0.886
A H 0.959
A H 0.974
F H 0.984
A H 0.981
A H 0.969
G H 0.949
L H 0.930
Q H 0.889
R H 0.769
G H 0.607
I H 0.471
N C 0.357
N C 0.296
P H 0.477
A H 0.546
V H 0.733
L H 0.888
P H 0.936
Q H 0.970
L H 0.976
F H 0.975
E H 0.977
V H 0.977
R H 0.977
A H 0.973
S H 0.964
H H 0.947
V H 0.920
L H 0.705
G T 0.569
A T 0.413
L C 0.446
P C 0.830
R H 0.708
E H 0.806
Q H 0.873
V H 0.935
S H 0.929
E H 0.941
F H 0.944
L H 0.918
S H 0.853
G H 0.928
L H 0.966
L H 0.983
I H 0.981
G H 0.986
A H 0.990
E H 0.986
V H 0.980
A H 0.936
T H 0.835
L H 0.758
S H 0.673
D H 0.563
T H 0.491
F H 0.349
A C 0.353
G T 0.680
Q T 0.624
Q C 0.543
A C 0.454
I E 0.921
S E 0.980
L E 0.978
V E 0.917
A C 0.445
G C 0.402
S G 0.489
S H 0.442
L H 0.800
T H 0.957
S H 0.975
R H 0.986
Y H 0.992
Q H 0.992
Q H 0.990
A H 0.990
F H 0.987
A H 0.974
A H 0.913
I T 0.558
G T 0.901
R C 0.777
E C 0.564
V E 0.596
S E 0.737
A E 0.643
V C 0.480
A C 0.804
G H 0.865
D H 0.939
T H 0.968
A H 0.979
F H 0.982
Q H 0.961
T H 0.920
G H 0.915
I H 0.944
R H 0.980
S H 0.975
I H 0.972
A H 0.944
Y H 0.849
A H 0.770
V H 0.554
A T 0.343
N C 0.986
END