# List of top-scoring protein chains for T0627.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	2.48e-21	a.132.1.4	97299
2qzcA	214	9.45e-16		
3mvuA	226	1.46e-11		
2gm8A	221	1.99e-09	a.132.1.3	135368
3ibxA	221	4.36e-09		
2rd3A	223	4.78e-09		
1uddA	226	2.19e-08	a.132.1.3	107776
1yakA	263	5.64e-07	a.132.1.3	122833
1to9A	260	5.73e-07	a.132.1.3	107172
1tyhA	248	6.03e-07	a.132.1.3	107458
1rtwA	220	6.94e-07	a.132.1.3	97823
2qcxA	263	8.81e-07		
2q4xA	221	0.000202	a.132.1.3	139880
3ddeA	239	0.003186		
2a6bA	234	0.004120	a.132.1.3	126235
1z72A	225	0.004145	a.132.1.3	124583
3hmlA	258	0.05258		
3hlxA	258	0.1168		
3hnhA	258	0.1283		
1otwA	255	0.1506	a.132.1.4	93528
1otvA	259	0.1512	a.132.1.4	93526
1wwmA	190	14.16	a.132.1.3	121363
1j30A	144	16.64	a.25.1.1	90806
1yadA	221	27.35		
3iam3	783	32.99		
1sq9A	397	35.60	b.69.4.1	105889
1s4uX	407	35.72	b.69.4.1	112027
3f2vA	192	41.19		
2aniA	346	46.58		
2plyA	258	79.72	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	149651,149652,149653,149654
1syyA	346	80.20	a.25.1.2	106126
2ja9A	175	84.43	b.40.4.5,d.51.1.1	147950,147951