# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rcwA 231 8.57e-23 a.132.1.4 97299 1yakA 263 1.41e-20 a.132.1.3 122833 1uddA 226 3.00e-20 a.132.1.3 107776 2qcxA 263 4.82e-20 1tyhA 248 5.94e-20 a.132.1.3 107458 3ibxA 221 1.55e-19 2rd3A 223 4.37e-19 1z72A 225 7.03e-19 a.132.1.3 124583 1rtwA 220 9.22e-19 a.132.1.3 97823 2qzcA 214 9.82e-19 3mvuA 226 1.42e-18 2f2gA 221 1.57e-17 a.132.1.3 132816 2q4xA 221 4.26e-17 a.132.1.3 139880 3ddeA 239 3.95e-16 2a2mA 258 5.78e-14 a.132.1.3 126039 1otvA 259 2.34e-13 a.132.1.4 93526 3hlxA 258 8.64e-13 3hmlA 258 3.82e-11 3hnhA 258 4.73e-10 3bjdA 332 1.35e-09 1wwmA 190 1.73e-09 a.132.1.3 121363 2zcoA 293 0.1100 3ge3B 327 3.926 1xjzA 233 4.140 a.132.1.1 122049 1mhyB 395 4.498 a.25.1.2 16781 2bnmA 198 6.574 a.35.1.3,b.82.1.10 128835,128836 3kuqA 228 6.902 3b5oA 244 7.509 1pbvA 195 7.545 a.118.3.1 19179 2ouwA 138 7.705 a.152.1.4 149029 1iw0A 215 8.007 a.132.1.1 83720 1cnsA 243 8.807 d.2.1.1 36241 2incB 322 9.060 a.25.1.2 137525 3hq2A 501 12.47 3fiwA 211 12.75 2inpC 328 13.22 2hvqA 335 13.73 2prrA 197 17.62 a.152.1.3 149803 3e7qA 215 17.69 2gmyA 153 18.75 a.152.1.3 135398 1jk0A 419 18.91 a.25.1.2 63142 1xk7A 408 21.24 c.123.1.1 122071 2zviA 425 21.75 1mtyB 384 23.16 a.25.1.2 16740 3dhiB 327 23.17 1r2fA 319 23.40 a.25.1.2 16800 2oyoA 196 23.56 a.152.1.3 149068 1kgnA 329 24.36 a.25.1.2 68584 3dhzA 329 27.10 a.25.1.2 157741 3hbeX 204 30.14 2wa5A 245 31.08 3bhqA 211 31.15 1crxA 322 31.65 a.60.9.1,d.163.1.1 18097,42157 3tmkA 216 31.67 c.37.1.1 31920 1ac5 483 32.48 3dtqA 186 32.59 4crxA 322 34.37 a.60.9.1,d.163.1.1 18095,42155 1wovA 250 37.03 a.132.1.1 121124 3mseB 180 38.49 2iaiA 230 38.87 3ip4B 483 39.06 1f44A 324 39.29 a.60.9.1,d.163.1.1 64982,64983 2ngrB 234 39.58 a.116.1.1 19105 1dxjA 242 40.35 d.2.1.1 36244 1t56A 216 40.70 a.4.1.9,a.121.1.1 106428,106429 2v9vA 135 43.34 a.4.5.35,a.4.5.35 152809,152810 1lmb3 92 46.14 6gsvA 217 48.10 a.45.1.1,c.47.1.5 17633,32925 2qf9A 179 48.31 1syyA 346 49.74 a.25.1.2 106126 1wzdA 215 50.15 a.132.1.1 121493 1bhgA 613 50.16 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1k0dA 260 50.26 a.45.1.1,c.47.1.5 67930,67931 2cjlA 204 51.18 1go3F 107 52.69 a.60.8.2 65407 1f3mA 80 53.12 j.66.1.1 46358 3cjpA 272 53.43 3iraA 173 54.49 1ivyA 452 56.96 c.69.1.5 34654 3l9vA 189 57.34 1mhyD 521 59.71 a.25.1.2 16780 2wwpA 176 60.72 3l9sA 191 61.62 2pbxA 203 64.36 3b7hA 78 65.55 1n45A 233 66.84 a.132.1.1 79981 2o4dA 165 67.53 a.152.1.3 138907 2z37A 244 67.99 2baa 243 68.11 3emrA 310 69.53 1w2yA 229 69.86 a.204.1.1 109140 2acaA 189 70.78 d.63.1.2 126545 2cro 71 71.66 1wxiA 275 73.68 c.26.2.1 121400 3fk2A 246 74.36 3ivpA 126 75.17 3hihA 223 75.70 1vi0A 206 75.91 a.4.1.9,a.121.1.1 100720,100721 2occE 109 76.83 a.118.11.1 19224 1de5A 426 78.48 c.1.15.2 29402 1qqsA 174 78.50 b.60.1.1 27143 3gzdA 440 78.82 2hpsA 186 80.91 1gm6A 175 80.95 b.60.1.1 70272 2oerA 214 82.83 3i9tA 263 84.62 1jfrA 262 84.68 c.69.1.16 34724 2vvlA 495 85.90 1d3uB 201 87.05 a.74.1.2,a.74.1.2 18386,18387 1wvvA 265 88.21 2x1dA 357 88.73 1b0nA 111 89.10 a.34.1.1,a.35.1.3 17001,17064