# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rcwA 231 6.03e-23 a.132.1.4 97299 1yakA 263 8.71e-21 a.132.1.3 122833 1uddA 226 3.24e-20 a.132.1.3 107776 1tyhA 248 3.65e-20 a.132.1.3 107458 2qcxA 263 4.30e-20 3ibxA 221 1.56e-19 2rd3A 223 3.04e-19 2qzcA 214 6.68e-19 1z72A 225 7.42e-19 a.132.1.3 124583 1rtwA 220 8.03e-19 a.132.1.3 97823 3mvuA 226 1.48e-18 2f2gA 221 2.02e-17 a.132.1.3 132816 2q4xA 221 3.00e-17 a.132.1.3 139880 3ddeA 239 2.95e-16 2a2mA 258 6.84e-14 a.132.1.3 126039 1otvA 259 3.68e-13 a.132.1.4 93526 3hlxA 258 7.48e-13 3hmlA 258 2.85e-11 3hnhA 258 5.75e-10 1wwmA 190 8.80e-10 a.132.1.3 121363 3bjdA 332 2.59e-09 2zcoA 293 0.1461 3ge3B 327 1.704 2incB 322 2.039 a.25.1.2 137525 1mhyB 395 3.982 a.25.1.2 16781 3hc5A 232 7.824 3dhiB 327 9.466 1jk0A 419 10.01 a.25.1.2 63142 1pbvA 195 10.94 a.118.3.1 19179 2inpC 328 11.20 2bnmA 198 13.03 a.35.1.3,b.82.1.10 128835,128836 2ouwA 138 13.24 a.152.1.4 149029 1cnsA 243 13.33 d.2.1.1 36241 3dhzA 329 14.12 a.25.1.2 157741 1r2fA 319 14.16 a.25.1.2 16800 6gsvA 217 16.66 a.45.1.1,c.47.1.5 17633,32925 3b5oA 244 16.74 3hq2A 501 18.04 1mtyB 384 20.62 a.25.1.2 16740 2hvqA 335 21.36 2prrA 197 22.29 a.152.1.3 149803 1mhyD 521 23.97 a.25.1.2 16780 3ip4B 483 24.48 3fiwA 211 24.60 1b4pA 217 25.28 a.45.1.1,c.47.1.5 83158,83159 3iraA 173 25.91 3d73A 119 25.93 1t0qB 330 26.76 a.25.1.2 106221 1iw0A 215 27.94 a.132.1.1 83720 1kgnA 329 32.31 a.25.1.2 68584 3e7qA 215 33.07 3bhqA 211 34.31 3bjhA 119 34.41 1xjzA 233 34.61 a.132.1.1 122049 2wa5A 245 34.80 2v9vA 135 36.25 a.4.5.35,a.4.5.35 152809,152810 1ac5 483 38.17 3dhiA 500 41.07 1w2yA 229 42.48 a.204.1.1 109140 1f3mA 80 42.67 j.66.1.1 46358 2iaiA 230 42.91 2oyoA 196 42.94 a.152.1.3 149068 1mvwC 147 47.08 i.15.1.1 79525 3d78A 119 47.20 1xk7A 408 47.50 c.123.1.1 122071 3cz1A 119 47.93 3hbeX 204 49.33 3hihA 223 50.46 3dvoA 338 51.12 3l9vA 189 52.80 3tmkA 216 53.56 c.37.1.1 31920 3kuqA 228 53.72 1t56A 216 54.39 a.4.1.9,a.121.1.1 106428,106429 1dxjA 242 54.58 d.2.1.1 36244 3dtqA 186 59.10 2wqmA 310 59.86 2zviA 425 60.59 1k0dA 260 61.38 a.45.1.1,c.47.1.5 67930,67931 2cjlA 204 62.42 1go3F 107 63.26 a.60.8.2 65407 1n8vA 112 63.27 a.118.21.1 85457 2wwpA 176 67.94 1ivyA 452 68.73 c.69.1.5 34654 4crxA 322 73.18 a.60.9.1,d.163.1.1 18095,42155 2gmyA 153 74.07 a.152.1.3 135398 1crxA 322 74.10 a.60.9.1,d.163.1.1 18097,42157 1f44A 324 74.12 a.60.9.1,d.163.1.1 64982,64983 1xw5A 217 74.72 a.45.1.1,c.47.1.5 116099,116100 3gs3A 257 75.09 3mseB 180 77.29 2z37A 244 78.51 2on5A 206 78.93 2qf9A 179 80.00 1b3uA 588 81.76 a.118.1.2 19135 1jfrA 262 83.16 c.69.1.16 34724 3bt5A 177 85.67 1h2eA 207 88.30 c.60.1.1 70857