# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	6.34e-22	a.132.1.4	97299
1yakA	263	1.24e-19	a.132.1.3	122833
1uddA	226	2.56e-19	a.132.1.3	107776
1tyhA	248	4.83e-19	a.132.1.3	107458
2qcxA	263	5.76e-19		
3ibxA	221	1.65e-18		
1rtwA	220	5.40e-18	a.132.1.3	97823
1z72A	225	5.86e-18	a.132.1.3	124583
2rd3A	223	6.61e-18		
3mvuA	226	1.02e-17		
2qzcA	214	1.27e-17		
2f2gA	221	6.95e-17	a.132.1.3	132816
2q4xA	221	1.90e-16	a.132.1.3	139880
3ddeA	239	3.11e-15		
2a2mA	258	9.46e-14	a.132.1.3	126039
1otvA	259	1.57e-12	a.132.1.4	93526
3hlxA	258	5.35e-12		
3hmlA	258	3.04e-10		
3hnhA	258	2.92e-09		
1wwmA	190	4.57e-09	a.132.1.3	121363
3bjdA	332	6.17e-09		
2zcoA	293	0.1263		
2hvqA	335	4.077		
1r2fA	319	5.106	a.25.1.2	16800
1kgnA	329	5.636	a.25.1.2	68584
2bnmA	198	6.777	a.35.1.3,b.82.1.10	128835,128836
1xk7A	408	7.196	c.123.1.1	122071
2zviA	425	8.810		
1cnsA	243	8.951	d.2.1.1	36241
1mhyB	395	11.60	a.25.1.2	16781
1pbvA	195	11.61	a.118.3.1	19179
3hq2A	501	13.30		
3fiwA	211	15.56		
3kuqA	228	17.38		
1go3F	107	22.52	a.60.8.2	65407
3dhzA	329	22.80	a.25.1.2	157741
2incB	322	23.47	a.25.1.2	137525
3ge3B	327	25.26		
3cjpA	272	26.66		
2ouwA	138	27.42	a.152.1.4	149029
3b5oA	244	27.86		
3tmkA	216	29.16	c.37.1.1	31920
3bhqA	211	33.77		
3emrA	310	34.45		
3hbeX	204	34.72		
3dtqA	186	36.21		
1jk0A	419	39.46	a.25.1.2	63142
3l34A	130	41.32		
2gmyA	153	42.12	a.152.1.3	135398
1ac5	483	42.67		
2vvlA	495	46.43		
1bhgA	613	47.71	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
2cjlA	204	48.53		
3iraA	173	49.40		
1xjzA	233	49.43	a.132.1.1	122049
1jfrA	262	50.27	c.69.1.16	34724
1dxjA	242	51.29	d.2.1.1	36244
4crxA	322	54.69	a.60.9.1,d.163.1.1	18095,42155
3c5pA	197	55.27		
3e7qA	215	56.58		
3b7hA	78	58.99		
3kkbA	130	59.41		
2wwpA	176	60.05		
3hihA	223	60.84		
1iw0A	215	61.07	a.132.1.1	83720
1de5A	426	62.25	c.1.15.2	29402
1t56A	216	63.81	a.4.1.9,a.121.1.1	106428,106429
1f44A	324	66.08	a.60.9.1,d.163.1.1	64982,64983
2wqmA	310	66.32		
1ivyA	452	73.79	c.69.1.5	34654
1wxiA	275	75.71	c.26.2.1	121400
3kzhA	328	75.89		
1d8wA	426	75.95	c.1.15.2	29394
1w2yA	229	75.95	a.204.1.1	109140
1xa3A	437	76.20	c.123.1.1	115025
3f2vA	192	76.67		
1f3mA	80	76.74	j.66.1.1	46358
2gdm	153	76.88		
2qacA	146	77.28		
2acaA	189	77.94	d.63.1.2	126545
1n8vA	112	77.95	a.118.21.1	85457
1gm6A	175	79.31	b.60.1.1	70272
2baa	243	79.87		
1crxA	322	79.93	a.60.9.1,d.163.1.1	18097,42157
6gsvA	217	81.65	a.45.1.1,c.47.1.5	17633,32925
2prrA	197	81.74	a.152.1.3	149803
1h2eA	207	83.05	c.60.1.1	70857
2qf9A	179	83.77		
1mtyB	384	85.78	a.25.1.2	16740
2wa5A	245	86.11		
1fadA	99	86.43	a.77.1.2	18428
1y7yA	74	88.05	a.35.1.3	122729
2iaiA	230	88.19