# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	3.02e-23	a.132.1.4	97299
1yakA	263	8.21e-21	a.132.1.3	122833
1uddA	226	1.53e-20	a.132.1.3	107776
2qcxA	263	3.74e-20		
1tyhA	248	3.95e-20	a.132.1.3	107458
3ibxA	221	1.04e-19		
1z72A	225	4.22e-19	a.132.1.3	124583
2rd3A	223	4.22e-19		
1rtwA	220	4.40e-19	a.132.1.3	97823
2qzcA	214	7.90e-19		
3mvuA	226	8.19e-19		
2f2gA	221	6.99e-18	a.132.1.3	132816
2q4xA	221	2.06e-17	a.132.1.3	139880
3ddeA	239	3.18e-16		
2a2mA	258	9.75e-15	a.132.1.3	126039
1otvA	259	2.57e-13	a.132.1.4	93526
3hlxA	258	1.12e-12		
3hmlA	258	5.68e-11		
3hnhA	258	7.44e-10		
3bjdA	332	1.50e-09		
1wwmA	190	1.52e-09	a.132.1.3	121363
2zcoA	293	0.1016		
1r2fA	319	4.278	a.25.1.2	16800
1pbvA	195	5.488	a.118.3.1	19179
1cnsA	243	5.613	d.2.1.1	36241
2hvqA	335	6.266		
1xk7A	408	6.506	c.123.1.1	122071
2bnmA	198	7.603	a.35.1.3,b.82.1.10	128835,128836
3hq2A	501	8.932		
1kgnA	329	9.161	a.25.1.2	68584
2zviA	425	10.36		
3kuqA	228	11.70		
1mhyB	395	12.26	a.25.1.2	16781
2ouwA	138	12.77	a.152.1.4	149029
3tmkA	216	12.82	c.37.1.1	31920
3b5oA	244	14.15		
3cjpA	272	17.09		
1go3F	107	19.53	a.60.8.2	65407
3dhzA	329	20.54	a.25.1.2	157741
2incB	322	21.21	a.25.1.2	137525
3hbeX	204	21.48		
3bhqA	211	21.55		
1xjzA	233	23.72	a.132.1.1	122049
1jk0A	419	24.20	a.25.1.2	63142
1ac5	483	24.33		
3fiwA	211	25.31		
3ge3B	327	26.55		
2gmyA	153	28.87	a.152.1.3	135398
1dxjA	242	30.53	d.2.1.1	36244
4crxA	322	31.11	a.60.9.1,d.163.1.1	18095,42155
2cjlA	204	33.39		
3l34A	130	33.61		
1iw0A	215	35.71	a.132.1.1	83720
3emrA	310	35.75		
2prrA	197	40.35	a.152.1.3	149803
1f44A	324	42.14	a.60.9.1,d.163.1.1	64982,64983
3e7qA	215	42.24		
3kkbA	130	45.96		
1t56A	216	46.68	a.4.1.9,a.121.1.1	106428,106429
1jfrA	262	46.71	c.69.1.16	34724
1w2yA	229	50.90	a.204.1.1	109140
2qf9A	179	56.36		
1crxA	322	56.47	a.60.9.1,d.163.1.1	18097,42157
2iaiA	230	56.64		
1ivyA	452	57.36	c.69.1.5	34654
2baa	243	57.43		
1fadA	99	59.17	a.77.1.2	18428
3dtqA	186	60.37		
1fztA	211	61.28	c.60.1.1	60158
1bhgA	613	61.99	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
6gsvA	217	63.15	a.45.1.1,c.47.1.5	17633,32925
1f3mA	80	63.17	j.66.1.1	46358
2wqmA	310	64.33		
3b7hA	78	64.49		
3hihA	223	65.06		
2z37A	244	65.73		
1zj8A	566	67.27	d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1	146003,146004,146005,146006
2gdm	153	69.63		
2wa5A	245	70.71		
3mseB	180	72.91		
1de5A	426	73.34	c.1.15.2	29402
1h2eA	207	75.61	c.60.1.1	70857
3f2vA	192	76.23		
1n8vA	112	77.24	a.118.21.1	85457
3kzhA	328	77.32		
1xa3A	437	80.51	c.123.1.1	115025
3l42A	130	81.02		
1k0dA	260	81.17	a.45.1.1,c.47.1.5	67930,67931
3bt5A	177	81.73		
2oyoA	196	82.70	a.152.1.3	149068
2qacA	146	85.75		
3iraA	173	85.84		
3c5pA	197	86.27		
2wwpA	176	86.79