# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	1.08e-21	a.132.1.4	97299
1yakA	263	2.35e-19	a.132.1.3	122833
1uddA	226	4.65e-19	a.132.1.3	107776
1tyhA	248	1.01e-18	a.132.1.3	107458
2qcxA	263	1.13e-18		
3ibxA	221	2.47e-18		
1rtwA	220	7.74e-18	a.132.1.3	97823
1z72A	225	7.92e-18	a.132.1.3	124583
2rd3A	223	9.29e-18		
3mvuA	226	1.83e-17		
2qzcA	214	1.86e-17		
2f2gA	221	1.00e-16	a.132.1.3	132816
2q4xA	221	2.88e-16	a.132.1.3	139880
3ddeA	239	5.26e-15		
2a2mA	258	1.15e-13	a.132.1.3	126039
1otvA	259	3.01e-12	a.132.1.4	93526
3hlxA	258	8.30e-12		
3hmlA	258	4.84e-10		
3hnhA	258	4.03e-09		
1wwmA	190	4.72e-09	a.132.1.3	121363
3bjdA	332	1.18e-08		
2zcoA	293	0.1601		
2hvqA	335	5.180		
1r2fA	319	6.338	a.25.1.2	16800
1xk7A	408	7.397	c.123.1.1	122071
1kgnA	329	7.715	a.25.1.2	68584
2bnmA	198	10.24	a.35.1.3,b.82.1.10	128835,128836
2zviA	425	10.81		
1cnsA	243	12.69	d.2.1.1	36241
1pbvA	195	13.19	a.118.3.1	19179
3hq2A	501	15.99		
3cjpA	272	18.48		
1mhyB	395	20.76	a.25.1.2	16781
1go3F	107	21.90	a.60.8.2	65407
3kuqA	228	24.65		
1bhgA	613	28.36	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
3b5oA	244	28.90		
2incB	322	29.89	a.25.1.2	137525
3ge3B	327	30.10		
3tmkA	216	31.52	c.37.1.1	31920
3emrA	310	31.81		
3dhzA	329	35.83	a.25.1.2	157741
3iraA	173	36.62		
3fiwA	211	37.34		
3l34A	130	38.61		
2ouwA	138	40.04	a.152.1.4	149029
3hbeX	204	49.91		
1jk0A	419	50.82	a.25.1.2	63142
1ac5	483	51.32		
1h2eA	207	52.00	c.60.1.1	70857
3kkbA	130	53.90		
3f2vA	192	54.61		
1jfrA	262	55.14	c.69.1.16	34724
3b7hA	78	57.10		
2vvlA	495	58.15		
3dtqA	186	58.87		
1xjzA	233	59.22	a.132.1.1	122049
1d8wA	426	62.84	c.1.15.2	29394
1ivyA	452	62.91	c.69.1.5	34654
2wqmA	310	64.66		
4crxA	322	68.03	a.60.9.1,d.163.1.1	18095,42155
1xa3A	437	69.42	c.123.1.1	115025
1f3mA	80	70.82	j.66.1.1	46358
3kzhA	328	71.47		
3e7qA	215	71.53		
1gv3A	248	73.70	a.2.11.1,d.44.1.1	70585,70586
2kj1A	89	73.78		
3ikhA	299	73.89		
3hihA	223	73.96		
1gm6A	175	74.82	b.60.1.1	70272
1iw0A	215	75.45	a.132.1.1	83720
6gsvA	217	75.95	a.45.1.1,c.47.1.5	17633,32925
2acaA	189	76.64	d.63.1.2	126545
1fztA	211	77.76	c.60.1.1	60158
2cjlA	204	77.90		
1n0nA	199	78.67	a.2.11.1,d.44.1.1	79750,79751
2gmyA	153	81.33	a.152.1.3	135398
3bpwA	342	82.58		
3bhqA	211	84.16		
1n8vA	112	84.26	a.118.21.1	85457
3c5pA	197	84.27		
1f44A	324	84.68	a.60.9.1,d.163.1.1	64982,64983
1w2yA	229	86.21	a.204.1.1	109140
2iaiA	230	88.61		
2wa5A	245	89.59