# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	3.02e-20	a.132.1.4	97299
1yakA	263	4.52e-17	a.132.1.3	122833
1uddA	226	5.22e-17	a.132.1.3	107776
3ibxA	221	2.23e-16		
3mvuA	226	2.39e-16		
2qcxA	263	3.46e-16		
2rd3A	223	4.10e-16		
1tyhA	248	4.54e-16	a.132.1.3	107458
1z72A	225	6.09e-16	a.132.1.3	124583
2qzcA	214	6.12e-16		
1rtwA	220	2.50e-15	a.132.1.3	97823
2f2gA	221	2.12e-14	a.132.1.3	132816
2q4xA	221	2.91e-14	a.132.1.3	139880
3ddeA	239	7.45e-14		
2a2mA	258	1.85e-12	a.132.1.3	126039
1otvA	259	1.90e-11	a.132.1.4	93526
3hlxA	258	2.04e-11		
3hmlA	258	8.62e-10		
3hnhA	258	1.56e-08		
3bjdA	332	3.24e-07		
1wwmA	190	5.61e-07	a.132.1.3	121363
1iw0A	215	0.9717	a.132.1.1	83720
2zcoA	293	0.9823		
1r2fA	319	1.500	a.25.1.2	16800
1kgnA	329	1.880	a.25.1.2	68584
3dhzA	329	2.835	a.25.1.2	157741
3ge3B	327	3.264		
1wzdA	215	3.397	a.132.1.1	121493
1mhyB	395	6.746	a.25.1.2	16781
3b5oA	244	7.325		
3dhiB	327	8.598		
1syyA	346	10.72	a.25.1.2	106126
3f2vA	192	12.83		
2incB	322	12.86	a.25.1.2	137525
2rccA	346	16.34		
2hvqA	335	18.80		
2iaiA	230	21.55		
1xjzA	233	22.95	a.132.1.1	122049
1w68A	390	24.77	a.25.1.2	109216
3hq2A	501	26.45		
1f5nA	592	29.24	a.114.1.1,c.37.1.8	19077,32152
1w99A	558	30.29		
1i4uA	181	31.72	b.60.1.1	61732
1wxiA	275	32.37	c.26.2.1	121400
2wwpA	176	32.42		
1d8wA	426	33.24	c.1.15.2	29394
1ciy	590	33.29		
3dtqA	186	34.98		
1pbvA	195	37.67	a.118.3.1	19179
2v9vA	135	39.84	a.4.5.35,a.4.5.35	152809,152810
3c8eA	288	39.98		
3gwcA	258	45.60		
1de5A	426	45.73	c.1.15.2	29402
1p2xA	159	47.91	a.40.1.1	104062
1n45A	233	51.70	a.132.1.1	79981
3lxzA	229	52.27		
1gwcA	230	54.54	a.45.1.1,c.47.1.5	70660,70661
1ciyA	590	55.06	b.18.1.3,b.77.2.1,f.1.3.1	23720,27977,43392
1wymA	155	56.16		
3hbeX	204	56.21		
2p8bA	369	57.94		
3l4rA	170	61.46		
2inpC	328	66.03		
2ouwA	138	67.14	a.152.1.4	149029
2oifA	162	69.63		
1gm6A	175	73.26	b.60.1.1	70272
1fadA	99	73.35	a.77.1.2	18428
2pbxA	203	73.56		
1wy3A	35	73.83		
2r7gA	347	74.21	a.74.1.3,a.74.1.3	151637,151638
2hlvA	160	78.80		
1cnsA	243	80.15	d.2.1.1	36241
1nhyA	219	82.54	a.45.1.1,c.47.1.5	80520,80521
3gy1A	408	82.60		
2cr5A	109	83.39	d.15.1.2	130733
1ac5	483	83.39		
2dqbA	376	83.52		
1fepA	724	83.69	f.4.3.3	43808
3d78A	119	84.14		
3c5pA	197	85.27		
3fd9A	256	86.54		
2acaA	189	87.35	d.63.1.2	126545
3himA	211	89.70