# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rcwA 231 7.18e-21 a.132.1.4 97299 1yakA 263 2.58e-18 a.132.1.3 122833 1uddA 226 3.49e-18 a.132.1.3 107776 2qcxA 263 6.10e-18 1tyhA 248 6.67e-18 a.132.1.3 107458 3ibxA 221 2.07e-17 2rd3A 223 5.07e-17 2qzcA 214 5.25e-17 1z72A 225 5.40e-17 a.132.1.3 124583 1rtwA 220 6.56e-17 a.132.1.3 97823 3mvuA 226 7.23e-17 2f2gA 221 8.96e-16 a.132.1.3 132816 2q4xA 221 2.63e-15 a.132.1.3 139880 3ddeA 239 1.89e-14 2a2mA 258 9.35e-13 a.132.1.3 126039 1otvA 259 4.75e-12 a.132.1.4 93526 3hlxA 258 1.81e-11 3hmlA 258 5.59e-10 3hnhA 258 5.01e-09 3bjdA 332 1.60e-08 1wwmA 190 3.21e-08 a.132.1.3 121363 2zcoA 293 0.1813 3ge3B 327 6.135 1mhyB 395 9.891 a.25.1.2 16781 1xk7A 408 10.48 c.123.1.1 122071 2bnmA 198 10.82 a.35.1.3,b.82.1.10 128835,128836 1pbvA 195 11.02 a.118.3.1 19179 2hvqA 335 11.55 2gmyA 153 11.55 a.152.1.3 135398 2incB 322 13.46 a.25.1.2 137525 3fiwA 211 14.58 1kgnA 329 14.72 a.25.1.2 68584 1cnsA 243 15.75 d.2.1.1 36241 2ouwA 138 22.24 a.152.1.4 149029 2zviA 425 22.85 1iw0A 215 23.83 a.132.1.1 83720 3kuqA 228 28.62 3dhiB 327 29.26 1jk0A 419 32.93 a.25.1.2 63142 1xjzA 233 34.17 a.132.1.1 122049 2oyoA 196 35.59 a.152.1.3 149068 3hq2A 501 36.26 3e7qA 215 38.09 1w99A 558 38.39 2prrA 197 38.73 a.152.1.3 149803 3dtqA 186 39.99 1d8wA 426 44.60 c.1.15.2 29394 1k0dA 260 45.09 a.45.1.1,c.47.1.5 67930,67931 3mseB 180 47.37 3iraA 173 48.32 2o4dA 165 48.83 a.152.1.3 138907 3hbeX 204 48.99 2iaiA 230 50.09 1r2fA 319 51.19 a.25.1.2 16800 1w2yA 229 51.32 a.204.1.1 109140 3bhqA 211 52.05 3b5oA 244 52.15 3tmkA 216 53.09 c.37.1.1 31920 1lmb3 92 53.44 1go3F 107 53.72 a.60.8.2 65407 1jfrA 262 53.87 c.69.1.16 34724 3bpwA 342 56.84 1de5A 426 57.61 c.1.15.2 29402 3l9vA 189 58.21 2inpC 328 58.35 4crxA 322 58.46 a.60.9.1,d.163.1.1 18095,42155 3ivpA 126 59.07 3l9sA 191 60.59 2v9vA 135 61.16 a.4.5.35,a.4.5.35 152809,152810 2occE 109 62.71 a.118.11.1 19224 1w36B 1180 64.68 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2zcxA 231 66.68 1x89A 178 67.77 b.60.1.1 121799 1gm6A 175 68.19 b.60.1.1 70272 3locA 212 69.54 1crxA 322 69.93 a.60.9.1,d.163.1.1 18097,42157 3b7hA 78 70.22 2auwA 170 70.60 a.35.1.10,d.331.1.1 127339,127340 1bhgA 613 70.97 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 6gsvA 217 72.26 a.45.1.1,c.47.1.5 17633,32925 2cjlA 204 72.39 1ivyA 452 75.49 c.69.1.5 34654 3gzdA 440 82.19 1wxiA 275 82.37 c.26.2.1 121400 1d3uB 201 82.59 a.74.1.2,a.74.1.2 18386,18387 1zj8A 566 83.02 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 146003,146004,146005,146006 1v54E 109 84.96 a.118.11.1 100326 2acaA 189 85.23 d.63.1.2 126545 2wwpA 176 85.68 1y7yA 74 88.38 a.35.1.3 122729 3gniB 396 89.52