# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	2.63e-21	a.132.1.4	97299
1yakA	263	9.09e-19	a.132.1.3	122833
1uddA	226	1.72e-18	a.132.1.3	107776
1tyhA	248	2.83e-18	a.132.1.3	107458
2qcxA	263	3.17e-18		
3ibxA	221	8.98e-18		
2rd3A	223	2.10e-17		
2qzcA	214	2.51e-17		
1z72A	225	3.40e-17	a.132.1.3	124583
1rtwA	220	3.89e-17	a.132.1.3	97823
3mvuA	226	4.70e-17		
2f2gA	221	2.74e-16	a.132.1.3	132816
2q4xA	221	8.70e-16	a.132.1.3	139880
3ddeA	239	1.28e-14		
2a2mA	258	7.81e-13	a.132.1.3	126039
1otvA	259	2.82e-12	a.132.1.4	93526
3hlxA	258	1.22e-11		
3hmlA	258	4.75e-10		
3hnhA	258	3.80e-09		
3bjdA	332	1.17e-08		
1wwmA	190	2.52e-08	a.132.1.3	121363
2zcoA	293	0.1247		
3ge3B	327	4.031		
1pbvA	195	5.912	a.118.3.1	19179
1kgnA	329	7.244	a.25.1.2	68584
2hvqA	335	12.68		
1mhyB	395	12.74	a.25.1.2	16781
2incB	322	13.07	a.25.1.2	137525
2gmyA	153	14.91	a.152.1.3	135398
2bnmA	198	15.26	a.35.1.3,b.82.1.10	128835,128836
2ouwA	138	15.85	a.152.1.4	149029
3fiwA	211	18.11		
1cnsA	243	18.31	d.2.1.1	36241
2zviA	425	21.00		
3dhiB	327	21.27		
1xk7A	408	21.90	c.123.1.1	122071
1jk0A	419	22.47	a.25.1.2	63142
3hq2A	501	23.65		
2prrA	197	25.27	a.152.1.3	149803
1xjzA	233	29.39	a.132.1.1	122049
3tmkA	216	30.25	c.37.1.1	31920
3f2vA	192	30.49		
1w99A	558	31.62		
3kuqA	228	33.01		
3cjpA	272	33.90		
1iw0A	215	34.63	a.132.1.1	83720
1bhgA	613	35.89	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
1r2fA	319	36.01	a.25.1.2	16800
2oyoA	196	37.24	a.152.1.3	149068
3iraA	173	40.46		
1lmb3	92	44.14		
3dtqA	186	47.68		
3e7qA	215	49.40		
3l9vA	189	51.07		
3dhzA	329	52.45	a.25.1.2	157741
1de5A	426	52.67	c.1.15.2	29402
3mseB	180	52.93		
1ivyA	452	55.68	c.69.1.5	34654
1go3F	107	55.79	a.60.8.2	65407
1w2yA	229	57.24	a.204.1.1	109140
3emrA	310	59.77		
1f3mA	80	61.70	j.66.1.1	46358
1d8wA	426	61.91	c.1.15.2	29394
3hbeX	204	62.28		
2o4dA	165	66.13	a.152.1.3	138907
3b7hA	78	67.32		
2occE	109	68.40	a.118.11.1	19224
2hpsA	186	69.48		
2inpC	328	70.26		
3l9sA	191	71.32		
1k0dA	260	75.27	a.45.1.1,c.47.1.5	67930,67931
3b5oA	244	79.33		
3ivpA	126	81.09		
2iaiA	230	81.33		
1v54E	109	82.99	a.118.11.1	100326
1fepA	724	83.60	f.4.3.3	43808
3gzdA	440	84.13		
1zj8A	566	86.40	d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1	146003,146004,146005,146006
1gm6A	175	87.59	b.60.1.1	70272