# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	1.12e-22	a.132.1.4	97299
1yakA	263	2.42e-20	a.132.1.3	122833
1uddA	226	7.72e-20	a.132.1.3	107776
1tyhA	248	1.06e-19	a.132.1.3	107458
2qcxA	263	1.71e-19		
3ibxA	221	3.66e-19		
2rd3A	223	8.32e-19		
1z72A	225	1.37e-18	a.132.1.3	124583
1rtwA	220	1.84e-18	a.132.1.3	97823
2qzcA	214	2.11e-18		
3mvuA	226	3.77e-18		
2f2gA	221	1.25e-17	a.132.1.3	132816
2q4xA	221	1.86e-17	a.132.1.3	139880
3ddeA	239	7.65e-16		
2a2mA	258	1.32e-13	a.132.1.3	126039
1otvA	259	8.12e-13	a.132.1.4	93526
3hlxA	258	1.39e-12		
3hmlA	258	6.41e-11		
3hnhA	258	1.51e-09		
1wwmA	190	2.36e-09	a.132.1.3	121363
3bjdA	332	4.61e-09		
2zcoA	293	0.1754		
3ge3B	327	4.138		
1pbvA	195	4.933	a.118.3.1	19179
2incB	322	6.432	a.25.1.2	137525
1xjzA	233	6.684	a.132.1.1	122049
1mhyB	395	7.789	a.25.1.2	16781
3fiwA	211	10.04		
2inpC	328	10.35		
3tmkA	216	12.17	c.37.1.1	31920
2ouwA	138	15.45	a.152.1.4	149029
3hc5A	232	15.79		
3iraA	173	16.58		
3dhiB	327	17.14		
1iw0A	215	19.43	a.132.1.1	83720
2hvqA	335	21.00		
2bnmA	198	23.49	a.35.1.3,b.82.1.10	128835,128836
1cnsA	243	23.63	d.2.1.1	36241
1xk7A	408	24.73	c.123.1.1	122071
2prrA	197	25.83	a.152.1.3	149803
2zviA	425	26.20		
3hq2A	501	27.21		
3gniB	396	29.43		
1jk0A	419	29.83	a.25.1.2	63142
1mvwC	147	37.49	i.15.1.1	79525
1r2fA	319	37.55	a.25.1.2	16800
6gsvA	217	38.63	a.45.1.1,c.47.1.5	17633,32925
1ac5	483	39.67		
1ivyA	452	43.03	c.69.1.5	34654
3cjpA	272	43.35		
3dhzA	329	43.59	a.25.1.2	157741
3kuqA	228	45.85		
3dhiA	500	48.70		
1b4pA	217	52.99	a.45.1.1,c.47.1.5	83158,83159
3b5oA	244	56.19		
3mseB	180	56.63		
3e7qA	215	57.61		
3gwcA	258	60.83		
2wa5A	245	61.33		
2vvlA	495	64.41		
2oyoA	196	65.77	a.152.1.3	149068
1t0qB	330	66.88	a.25.1.2	106221
1go3F	107	68.80	a.60.8.2	65407
3kzhA	328	71.23		
1mtyB	384	72.44	a.25.1.2	16740
3hihA	223	73.58		
3bt5A	177	76.75		
1f3mA	80	77.08	j.66.1.1	46358
2pqxA	245	80.03		
1kgnA	329	82.81	a.25.1.2	68584
1h67A	108	85.85	a.40.1.1	65643
1yh2A	175	86.62	d.20.1.1	123158
3dtqA	186	86.84		
1mu5A	471	87.75	a.156.1.3,d.14.1.3,d.122.1.2	79472,79473,79474