# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	1.26e-22	a.132.1.4	97299
1yakA	263	4.13e-20	a.132.1.3	122833
1uddA	226	6.52e-20	a.132.1.3	107776
2qcxA	263	9.43e-20		
1tyhA	248	1.22e-19	a.132.1.3	107458
3ibxA	221	3.25e-19		
2rd3A	223	7.54e-19		
1z72A	225	9.54e-19	a.132.1.3	124583
1rtwA	220	1.25e-18	a.132.1.3	97823
2qzcA	214	1.55e-18		
3mvuA	226	2.14e-18		
2f2gA	221	1.95e-17	a.132.1.3	132816
2q4xA	221	2.41e-17	a.132.1.3	139880
3ddeA	239	4.48e-16		
2a2mA	258	6.79e-14	a.132.1.3	126039
1otvA	259	5.89e-13	a.132.1.4	93526
3hlxA	258	1.47e-12		
3hmlA	258	4.88e-11		
3hnhA	258	9.34e-10		
3bjdA	332	1.67e-09		
1wwmA	190	3.49e-09	a.132.1.3	121363
2zcoA	293	0.1625		
3ge3B	327	3.119		
1mhyB	395	5.160	a.25.1.2	16781
2incB	322	6.197	a.25.1.2	137525
1cnsA	243	9.618	d.2.1.1	36241
2zviA	425	10.19		
1pbvA	195	13.02	a.118.3.1	19179
2inpC	328	15.63		
3dhiB	327	17.20		
3hq2A	501	17.63		
1r2fA	319	18.18	a.25.1.2	16800
1xjzA	233	19.60	a.132.1.1	122049
2hvqA	335	21.03		
1iw0A	215	21.17	a.132.1.1	83720
1ac5	483	21.96		
3iraA	173	22.43		
2ouwA	138	23.05	a.152.1.4	149029
1dxjA	242	27.43	d.2.1.1	36244
1jk0A	419	28.68	a.25.1.2	63142
2bnmA	198	30.05	a.35.1.3,b.82.1.10	128835,128836
3dhzA	329	33.23	a.25.1.2	157741
3hbeX	204	34.06		
3d73A	119	35.76		
3fiwA	211	37.59		
3b5oA	244	38.69		
1go3F	107	38.89	a.60.8.2	65407
1xk7A	408	41.33	c.123.1.1	122071
2prrA	197	43.94	a.152.1.3	149803
3hc5A	232	44.48		
3tmkA	216	44.90	c.37.1.1	31920
1kgnA	329	47.79	a.25.1.2	68584
3kzhA	328	48.97		
2wa5A	245	49.14		
3l9vA	189	49.70		
1f3mA	80	50.66	j.66.1.1	46358
1bhgA	613	50.80	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
6gsvA	217	51.66	a.45.1.1,c.47.1.5	17633,32925
3mseB	180	51.70		
3bjhA	119	52.67		
1mhyD	521	53.20	a.25.1.2	16780
3e7qA	215	54.08		
1w2yA	229	56.05	a.204.1.1	109140
2bhoA	130	57.76		
1ivyA	452	58.76	c.69.1.5	34654
3dtqA	186	61.87		
3kuqA	228	61.90		
2cjlA	204	61.94		
4crxA	322	64.25	a.60.9.1,d.163.1.1	18095,42155
3cz1A	119	64.79		
2z37A	244	66.21		
1wurA	220	66.40	d.96.1.1	121309
1t0qB	330	67.35	a.25.1.2	106221
3ivpA	126	68.16		
1mtyB	384	70.26	a.25.1.2	16740
2acaA	189	70.71	d.63.1.2	126545
2x1dA	357	70.79		
3dhiA	500	71.15		
1e0gA	48	73.62	d.7.1.1	37325
2hpsA	186	73.96		
3d78A	119	74.43		
1wvvA	265	74.67		
1kfrA	147	76.91	a.1.1.2	72424
3gwcA	258	76.94		
1wymA	155	77.32		
1b4pA	217	80.64	a.45.1.1,c.47.1.5	83158,83159
2baa	243	81.28		
1jfrA	262	82.16	c.69.1.16	34724
2wwpA	176	82.80		
3ljvA	283	83.53		
1qu7A	227	85.76	h.4.5.1	45789
2gmyA	153	86.12	a.152.1.3	135398
1f44A	324	86.34	a.60.9.1,d.163.1.1	64982,64983
2wqmA	310	87.83