# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	9.65e-23	a.132.1.4	97299
1yakA	263	2.29e-20	a.132.1.3	122833
1uddA	226	4.94e-20	a.132.1.3	107776
1tyhA	248	9.73e-20	a.132.1.3	107458
2qcxA	263	1.18e-19		
3ibxA	221	4.25e-19		
2rd3A	223	7.26e-19		
1z72A	225	9.61e-19	a.132.1.3	124583
1rtwA	220	1.46e-18	a.132.1.3	97823
2qzcA	214	1.67e-18		
3mvuA	226	2.67e-18		
2f2gA	221	1.88e-17	a.132.1.3	132816
2q4xA	221	3.00e-17	a.132.1.3	139880
3ddeA	239	7.75e-16		
2a2mA	258	1.14e-13	a.132.1.3	126039
1otvA	259	4.75e-13	a.132.1.4	93526
3hlxA	258	1.41e-12		
3hmlA	258	4.21e-11		
3hnhA	258	1.03e-09		
1wwmA	190	3.18e-09	a.132.1.3	121363
3bjdA	332	3.29e-09		
2zcoA	293	0.2073		
3ge3B	327	3.613		
2zviA	425	5.847		
2incB	322	7.761	a.25.1.2	137525
1mhyB	395	11.87	a.25.1.2	16781
1pbvA	195	13.04	a.118.3.1	19179
1cnsA	243	18.18	d.2.1.1	36241
2ouwA	138	18.80	a.152.1.4	149029
2hvqA	335	19.31		
2bnmA	198	19.59	a.35.1.3,b.82.1.10	128835,128836
3dhiB	327	20.37		
1xjzA	233	24.47	a.132.1.1	122049
1r2fA	319	26.22	a.25.1.2	16800
1iw0A	215	26.40	a.132.1.1	83720
1xk7A	408	28.09	c.123.1.1	122071
3mseB	180	34.16		
2inpC	328	34.88		
2prrA	197	35.72	a.152.1.3	149803
3fiwA	211	35.91		
3hq2A	501	37.54		
1kgnA	329	38.19	a.25.1.2	68584
1jk0A	419	38.71	a.25.1.2	63142
1bhgA	613	38.86	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
3cjpA	272	38.95		
3kuqA	228	39.05		
3iraA	173	44.84		
1go3F	107	45.54	a.60.8.2	65407
3dhzA	329	48.76	a.25.1.2	157741
1f3mA	80	52.50	j.66.1.1	46358
1mtyB	384	52.56	a.25.1.2	16740
3tmkA	216	54.39	c.37.1.1	31920
2gmyA	153	57.01	a.152.1.3	135398
3emrA	310	63.10		
1ivyA	452	65.32	c.69.1.5	34654
3b5oA	244	65.78		
1t0qB	330	66.15	a.25.1.2	106221
1ac5	483	68.72		
6gsvA	217	69.43	a.45.1.1,c.47.1.5	17633,32925
3hihA	223	72.96		
1e0gA	48	74.69	d.7.1.1	37325
2bhoA	130	74.88		
1jfrA	262	75.35	c.69.1.16	34724
3hbeX	204	78.05		
2oyoA	196	79.13	a.152.1.3	149068
3l9vA	189	79.85		
3e7qA	215	80.35		
3d73A	119	81.40		
2hpsA	186	81.62		
3gwcA	258	82.61		
1mvwC	147	89.00	i.15.1.1	79525
1b4pA	217	89.51	a.45.1.1,c.47.1.5	83158,83159