# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	1.06e-20	a.132.1.4	97299
1yakA	263	5.02e-18	a.132.1.3	122833
1uddA	226	1.51e-17	a.132.1.3	107776
2qcxA	263	2.76e-17		
1tyhA	248	3.08e-17	a.132.1.3	107458
3ibxA	221	4.25e-17		
2rd3A	223	7.41e-17		
3mvuA	226	1.71e-16		
1z72A	225	1.96e-16	a.132.1.3	124583
2qzcA	214	3.04e-16		
1rtwA	220	3.24e-16	a.132.1.3	97823
2f2gA	221	9.77e-16	a.132.1.3	132816
2q4xA	221	1.88e-15	a.132.1.3	139880
3ddeA	239	2.63e-14		
2a2mA	258	5.21e-12	a.132.1.3	126039
1otvA	259	1.88e-11	a.132.1.4	93526
3hlxA	258	2.52e-11		
3hmlA	258	4.49e-09		
3hnhA	258	2.39e-08		
3bjdA	332	1.02e-07		
1wwmA	190	7.73e-06	a.132.1.3	121363
1iw0A	215	0.2110	a.132.1.1	83720
1xjzA	233	0.8115	a.132.1.1	122049
1wzdA	215	2.179	a.132.1.1	121493
2zcoA	293	3.754		
1n45A	233	4.269	a.132.1.1	79981
2inpC	328	4.613		
2incB	322	4.672	a.25.1.2	137525
1mhyB	395	5.234	a.25.1.2	16781
3f2vA	192	6.240		
3ge3B	327	6.619		
1j77A	209	8.642	a.132.1.2	62674
3i9tA	263	14.45		
3dhzA	329	16.68	a.25.1.2	157741
3e4rA	324	17.46		
3b5oA	244	19.04		
1tzzA	392	19.62	c.1.11.2,d.54.1.1	112896,112897
3dhiB	327	21.33		
1cnsA	243	26.35	d.2.1.1	36241
1syyA	346	28.72	a.25.1.2	106126
1sk7A	198	42.45	a.132.1.2	105671
1b65A	375	46.54	d.154.1.1	42020
1mtyB	384	48.98	a.25.1.2	16740
3cs1A	219	56.40		
2rccA	346	59.32		
1dxjA	242	63.26	d.2.1.1	36244
1w99A	558	64.62		
1w68A	390	65.32	a.25.1.2	109216
3hbeX	204	68.20		
3fsaA	125	72.65		
1kgnA	329	73.68	a.25.1.2	68584
1wovA	250	74.01	a.132.1.1	121124
2cjlA	204	78.47		
1vkpA	383	78.59	d.126.1.6	108686
1wvvA	265	80.38		
2hfqA	109	85.03	d.375.1.1	147278