# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rcwA	231	7.80e-23	a.132.1.4	97299
1uddA	226	1.69e-19	a.132.1.3	107776
1yakA	263	2.59e-19	a.132.1.3	122833
3ibxA	221	7.99e-19		
1tyhA	248	9.60e-19	a.132.1.3	107458
2qcxA	263	1.40e-18		
2rd3A	223	1.41e-18		
2qzcA	214	2.97e-18		
1rtwA	220	3.11e-18	a.132.1.3	97823
1z72A	225	5.04e-18	a.132.1.3	124583
3mvuA	226	5.88e-18		
2f2gA	221	3.32e-17	a.132.1.3	132816
2q4xA	221	4.75e-17	a.132.1.3	139880
3ddeA	239	2.07e-15		
2a2mA	258	1.34e-13	a.132.1.3	126039
1otvA	259	5.91e-13	a.132.1.4	93526
3hlxA	258	1.60e-12		
3hmlA	258	1.74e-10		
3hnhA	258	1.21e-09		
3bjdA	332	1.41e-08		
1wwmA	190	3.37e-08	a.132.1.3	121363
1iw0A	215	0.3122	a.132.1.1	83720
2zcoA	293	0.5312		
3ge3B	327	0.6755		
1xjzA	233	0.8997	a.132.1.1	122049
3dhzA	329	1.371	a.25.1.2	157741
1kgnA	329	1.463	a.25.1.2	68584
1r2fA	319	1.623	a.25.1.2	16800
3dhiB	327	3.347		
1wzdA	215	3.862	a.132.1.1	121493
2incB	322	3.927	a.25.1.2	137525
3gwcA	258	5.610		
1mhyB	395	6.992	a.25.1.2	16781
3b5oA	244	9.595		
3f2vA	192	11.45		
1cnsA	243	16.10	d.2.1.1	36241
3fiwA	211	17.64		
2ouwA	138	18.17	a.152.1.4	149029
1n45A	233	18.70	a.132.1.1	79981
1pbvA	195	18.97	a.118.3.1	19179
1w68A	390	20.13	a.25.1.2	109216
1w99A	558	21.03		
1t0qB	330	25.14	a.25.1.2	106221
3hbeX	204	25.27		
1dxjA	242	28.84	d.2.1.1	36244
1xk7A	408	29.59	c.123.1.1	122071
2inpC	328	29.78		
1wymA	155	38.73		
1j77A	209	38.76	a.132.1.2	62674
2v9vA	135	39.64	a.4.5.35,a.4.5.35	152809,152810
2wa5A	245	41.04		
3iraA	173	45.61		
2on5A	206	46.66		
2cjlA	204	48.88		
1ac5	483	51.05		
2kj1A	89	53.07		
1zdsA	336	53.58	b.6.1.3,b.6.1.3	124952,124953
3gt2A	142	54.57		
2bw4A	340	61.68	b.6.1.3,b.6.1.3	129320,129321
2rccA	346	61.80		
1jqhA	308	62.70	d.144.1.7	71793
2acaA	189	69.83	d.63.1.2	126545
2uuiA	156	73.22	f.56.1.1	152184
2e2eA	177	74.40		
1as4A	341	74.88	e.1.1.1	42623
1fvrA	327	77.25	d.144.1.7	60047
3cs1A	219	78.99		
3tmkA	216	79.61	c.37.1.1	31920
1xqrA	296	81.59	a.118.1.21	122241
3d73A	119	82.60		
3fd9A	256	84.03		
2uz0A	263	84.19		
2bhoA	130	85.52		
1e0gA	48	85.71	d.7.1.1	37325
1syyA	346	87.66	a.25.1.2	106126
1b4pA	217	87.94	a.45.1.1,c.47.1.5	83158,83159