# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rcwA 231 3.02e-11 a.132.1.4 97299 2qzcA 214 8.85e-10 1yakA 263 9.30e-10 a.132.1.3 122833 3ibxA 221 1.04e-09 2rd3A 223 1.97e-09 1tyhA 248 2.98e-09 a.132.1.3 107458 1uddA 226 4.72e-09 a.132.1.3 107776 2qcxA 263 8.08e-09 3mvuA 226 1.20e-08 1z72A 225 1.82e-08 a.132.1.3 124583 1rtwA 220 8.02e-08 a.132.1.3 97823 3ddeA 239 8.75e-08 1otvA 259 1.27e-07 a.132.1.4 93526 3hmlA 258 7.55e-07 3hlxA 258 2.49e-06 2q4xA 221 8.86e-06 a.132.1.3 139880 3hnhA 258 1.63e-05 2a2mA 258 1.96e-05 a.132.1.3 126039 2f2gA 221 0.000143 a.132.1.3 132816 1wwmA 190 0.001751 a.132.1.3 121363 3bjdA 332 0.009633 1wzdA 215 0.2840 a.132.1.1 121493 1lkvX 232 2.501 a.118.14.1 73980 1xjzA 233 3.660 a.132.1.1 122049 1n45A 233 3.879 a.132.1.1 79981 1syyA 346 4.622 a.25.1.2 106126 3i9tA 263 4.685 1iw0A 215 4.726 a.132.1.1 83720 3ljvA 283 5.536 2o8iA 165 6.576 a.288.1.1 148676 3hx4A 508 6.768 3n7qA 310 6.987 1j77A 209 7.604 a.132.1.2 62674 2o70A 174 8.767 a.288.1.1 148645 2aclB 244 8.863 a.123.1.1 144801 3ljxA 288 9.190 3ip4B 483 9.692 1s1eA 224 12.50 a.39.1.5 112007 3k0lA 162 13.21 2ouxA 286 13.63 a.118.26.1,d.37.1.1 149031,149032 1i2oA 316 13.81 c.1.10.1 61574 1sk7A 198 13.98 a.132.1.2 105671 3gykA 175 14.58 2fd5A 180 15.86 a.4.1.9,a.121.1.1 133291,133292 1f44A 324 16.05 a.60.9.1,d.163.1.1 64982,64983 1pq9A 253 16.48 a.123.1.1 95004 1g2nA 264 16.98 a.123.1.1 60227 1onrA 316 18.08 c.1.10.1 29169 3i5gC 159 18.23 2fmpA 335 18.66 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 1dfoA 417 21.68 c.67.1.4 34480 1hg4A 279 22.28 a.123.1.1 19333 1dkfA 233 22.38 a.123.1.1 19280 1rd5A 262 23.15 c.1.2.4 111772 1a0p 290 23.44 1kbuA 349 24.52 a.60.9.1,d.163.1.1 72284,72285 3l1bA 233 24.56 1hlbA 158 26.23 a.1.1.2 15625 2q4uA 272 26.42 2f1sA 186 26.75 3e3rA 204 26.86 2ovkC 159 27.59 1l2tA 235 28.12 c.37.1.12 73514 1m9nA 613 28.24 c.24.1.3,c.97.1.4 78870,78871 3hbeX 204 30.63 1l2iA 261 31.83 a.123.1.1 73503 1kgnA 329 31.94 a.25.1.2 68584 1khoA 370 33.74 a.124.1.1,b.12.1.3 72489,72490 3dhzA 329 33.80 a.25.1.2 157741 1rec 201 34.13 3fxvA 233 35.04 2wxfA 940 35.44 2wyeB 546 35.50 1g8mA 593 35.52 c.24.1.3,c.97.1.4 60371,60372 1g5yA 238 35.77 a.123.1.1 60294 1ialA 453 36.26 a.118.1.1 19116 1vkeA 133 36.71 a.152.1.2 108650 2r40D 266 36.80 a.123.1.1 151572 1crxA 322 37.36 a.60.9.1,d.163.1.1 18097,42157 3bv4A 341 38.71 1f07A 321 38.75 c.1.16.3 59560 3da1A 561 39.04 2g7gA 213 39.28 a.4.1.9,a.121.1.1 134732,134733 2o4dA 165 40.66 a.152.1.3 138907 1bedA 181 41.14 c.47.1.13 90330 2wa5A 245 41.31 2vguA 407 41.44 1xiuA 230 41.98 3c8gA 172 42.48 a.285.1.1 156033 1b8dB 177 42.55 a.1.1.3 15666 2b6cA 220 42.98 a.118.1.17 127983 2wa6A 245 43.44 4crxA 322 43.46 a.60.9.1,d.163.1.1 18095,42155 1a0pA 290 45.19 a.60.9.1,d.163.1.1 18105,42165 3brbA 313 45.44 3fiwA 211 45.49 3gytA 244 46.17 2bbrA 195 46.20 1sh5A 245 46.44 a.40.1.1,a.40.1.1 105543,105544 2pgsA 451 46.78 2awiA 317 48.04 a.35.1.11,a.118.8.4 127435,127436 1p2xA 159 48.69 a.40.1.1 104062 3fc6B 266 48.72 3ipqA 283 48.86 3deeA 249 50.02 1qsaA 618 50.96 a.118.5.1,d.2.1.6 19182,36988 2gxgA 146 52.11 1k4wA 252 52.14 a.123.1.1 72068 3c1lA 188 52.21 3m66A 270 52.22 1kl1A 419 52.29 c.67.1.4 72663 1xo0A 324 52.69 a.60.9.1,d.163.1.1 115674,115675 3gd2A 229 52.84 3ertA 261 53.28 a.123.1.1 19292 3kofA 337 55.33 1omrA 201 55.73 a.39.1.5 93349 2qwwA 154 57.02 1j9aA 184 58.67 c.55.3.5 84135 3h5qA 436 59.18 3lc0A 456 60.04 1bmtA 246 60.22 a.46.1.1,c.23.6.1 17757,31235 1b3uA 588 60.54 a.118.1.2 19135 3d5lA 221 61.34 3dfgA 162 61.55 3f4rA 226 62.26 2p0tA 176 62.31 a.290.1.1 149141 1bk6A 422 62.85 a.118.1.1 19133 2viaA 405 62.92 1dvoA 152 63.05 a.136.1.1 19623 2zihA 347 63.28 3js4A 227 64.53 2j5vA 367 65.43 3gp2A 147 66.73 3fwbA 161 67.36 1aoa 275 67.61 2q1zA 184 67.86 1m7sA 484 68.51 e.5.1.1 74574 2amxA 376 68.89 c.1.9.1 127024 1vbuA 328 69.17 c.1.8.3 119963 2p1tA 240 69.24 a.123.1.1 149165 1vz0A 230 69.86 a.4.14.1,d.268.1.1 108929,108930 1ad4A 266 72.70 c.1.21.1 29670 1n83A 270 72.96 a.123.1.1 80276 3gflA 146 73.54 2g0wA 296 74.74 c.1.15.4 134503 2vebA 195 74.97 2x49A 333 75.78 2wpnB 495 76.57 1l6nA 289 76.69 a.61.1.1,a.73.1.1 73624,73625 1v4vA 376 76.97 c.87.1.3 100313 1a28A 256 77.03 a.123.1.1 19290 1amk 251 77.61 3crxA 343 78.16 a.60.9.1,d.163.1.1 18101,42161 3b5oA 244 78.29 1tzzA 392 78.31 c.1.11.2,d.54.1.1 112896,112897 1qbqA 333 78.39 a.118.6.1 19187 1qv9A 283 78.91 c.127.1.1 96356 1izmA 184 79.77 a.199.1.1 90725 1wdcB 156 80.52 a.39.1.5 17302 1g3nC 257 80.77 a.74.1.1,a.74.1.1 18366,18367 2w31A 162 80.89 2ihiA 395 81.76 1t0qB 330 82.36 a.25.1.2 106221 3g33B 306 83.30 1p5sA 203 83.51 a.40.1.1 94147 1lnwA 147 83.55 a.4.5.28 78104 3cwnA 337 84.44 3gbxA 420 84.66 3mbdA 342 85.01 1t06A 235 86.52 a.118.1.17 106194 2iaiA 230 87.87 3hibA 318 88.23 1qkmA 255 88.33 a.123.1.1 19309 1r2fA 319 89.33 a.25.1.2 16800 1fxxA 482 89.42 c.55.3.5 33726 3abqA 453 89.80 2f3yA 148 89.84 a.39.1.5 146994