# List of top-scoring protein chains for T0627.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 2.44e-25 a.132.1.3 122833 1to9A 260 2.71e-25 a.132.1.3 107172 2qcxA 263 3.56e-25 1tyhA 248 1.10e-24 a.132.1.3 107458 2rd3A 223 7.56e-24 3ibxA 221 8.27e-24 3mvuA 226 4.01e-23 3hmlA 258 4.98e-23 3hlxA 258 5.88e-23 1otwA 255 6.88e-23 a.132.1.4 93528 1otvA 259 7.58e-23 a.132.1.4 93526 3hnhA 258 3.26e-22 1uddA 226 1.62e-21 a.132.1.3 107776 2gm8A 221 5.16e-21 a.132.1.3 135368 1rcwA 231 2.27e-20 a.132.1.4 97299 1rtwA 220 2.40e-20 a.132.1.3 97823 2a6bA 234 8.51e-19 a.132.1.3 126235 1z72A 225 1.06e-18 a.132.1.3 124583 2q4xA 221 1.52e-16 a.132.1.3 139880 3ddeA 239 4.88e-16 2qzcA 214 7.58e-16 3bjdA 332 2.89e-10 2a2mA 258 1.43e-09 a.132.1.3 126039 1syyA 346 1.75e-05 a.25.1.2 106126 2aniA 346 2.32e-05 1ozlA 233 2.62e-05 a.132.1.1 93848 3b5oA 244 2.64e-05 1xk0A 233 4.29e-05 a.132.1.1 122051 1xjzA 233 4.83e-05 a.132.1.1 122049 1xk3A 233 5.27e-05 a.132.1.1 115400 1n45A 233 6.02e-05 a.132.1.1 79981 1ni6A 224 6.56e-05 a.132.1.1 85734 1xk1A 233 8.55e-05 a.132.1.1 122053 3i9tA 263 0.000113 1j02A 267 0.000113 a.132.1.1 90732 1wnvA 215 0.000207 a.132.1.1 114762 1wnwA 215 0.000219 a.132.1.1 114765 1wzdA 215 0.000325 a.132.1.1 121493 1wnxA 215 0.000478 a.132.1.1 114768 1dvgA 267 0.001044 a.132.1.1 19510 1we1A 240 0.005437 a.132.1.1 114542 1wwmA 190 0.01771 a.132.1.3 121363 2q32A 264 0.02824 1wovA 250 2.527 a.132.1.1 121124 2hszA 243 5.747 c.108.1.6 136726 3ia7A 402 5.888 3ez0A 225 6.498 3a4xA 311 7.728 1j30A 144 10.62 a.25.1.1 90806 3ee4A 323 17.38 1tmoA 829 23.11 b.52.2.2,c.81.1.1 26919,35327 1sofA 156 26.55 a.25.1.1 118973 2fkzA 155 28.29 a.25.1.1 133688 3hy0A 441 28.40 3a4wA 311 28.80 1f6wA 533 29.31 c.69.1.1 34629 1p49A 562 30.56 c.76.1.2 94089 3lyfA 245 33.30 2dskA 311 36.01 2h84A 374 36.89 2ri2A 319 38.02 3jzyA 510 38.50 1ug6A 431 39.14 c.1.8.4 88490 3g0tA 437 39.90 2ri5A 319 40.01 1i9sA 210 40.40 c.45.1.1 62099 2rhzA 319 43.55 2eiaA 206 43.67 a.28.3.1,a.73.1.1 16949,18329 1eiaA 207 43.71 a.28.3.1,a.73.1.1 16951,18331 3chhA 336 44.41 2jcdA 345 44.55 1vhzA 198 45.80 d.113.1.1 100718 3hxwA 441 47.77 2rhyA 319 49.04 2rhuA 329 51.39 3fhdA 508 52.30 2ri3A 319 54.77 3kq5A 393 61.22 1j77A 209 63.01 a.132.1.2 62674 2jjxA 255 64.40 1rxwA 336 65.26 a.60.7.1,c.120.1.2 98059,98060 2rjhA 379 65.31 2r85A 334 65.47 c.30.1.8,d.142.1.9 151676,151677 2c46A 241 66.05 2rfkA 334 66.88 b.122.1.1,d.265.1.2 151996,151997 2a79B 499 69.80 2wb7A 526 70.05 3a1fA 186 70.57 3l4gB 589 72.74 2itbA 206 77.16 a.25.1.7 147793 1x6iA 91 77.50 1za0A 275 77.57 a.25.1.2 124774 1jmyA 522 78.71 c.69.1.1 63182 3locA 212 78.75 1cbgA 490 79.09 c.1.8.4 28933 2zl7A 295 84.05 1lvkA 762 84.94 b.34.3.1,c.37.1.9 24576,32173 3d26A 301 85.12 2i53A 258 85.61 a.74.1.1,a.74.1.1 147505,147506 2rhiA 345 88.76 3b8vA 379 89.21