# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 9.71e-21 3ddeA 239 2.16e-20 1yakA 263 2.49e-20 a.132.1.3 122833 3ibxA 221 2.63e-20 2rd3A 223 3.16e-20 3mvuA 226 3.78e-20 1tyhA 248 3.84e-20 a.132.1.3 107458 1uddA 226 5.81e-20 a.132.1.3 107776 1rcwA 231 1.07e-19 a.132.1.4 97299 1z72A 225 1.35e-19 a.132.1.3 124583 3hlxA 258 3.28e-19 2a2mA 258 3.57e-19 a.132.1.3 126039 1otvA 259 5.15e-19 a.132.1.4 93526 1rtwA 220 1.35e-18 a.132.1.3 97823 2qzcA 214 2.08e-18 2f2gA 221 3.13e-18 a.132.1.3 132816 3hmlA 258 8.65e-18 2q4xA 221 2.46e-16 a.132.1.3 139880 3hnhA 258 2.57e-16 3bjdA 332 1.26e-15 1wwmA 190 1.62e-11 a.132.1.3 121363 3b5oA 244 9.92e-10 1wzdA 215 5.03e-09 a.132.1.1 121493 1iw0A 215 1.10e-08 a.132.1.1 83720 3i9tA 263 6.86e-08 1n45A 233 6.97e-07 a.132.1.1 79981 1wovA 250 2.32e-06 a.132.1.1 121124 1sk7A 198 0.000887 a.132.1.2 105671 1j77A 209 0.003234 a.132.1.2 62674 2jcdA 345 0.1458 3ge3A 500 0.2508 3chhA 336 0.2766 1w68A 390 0.5718 a.25.1.2 109216 1syyA 346 0.6993 a.25.1.2 106126 2itbA 206 0.9090 a.25.1.7 147793 3dhzA 329 1.500 a.25.1.2 157741 1kgnA 329 1.522 a.25.1.2 68584 2inpA 494 2.016 3ee4A 323 2.456 2incA 491 2.726 a.25.1.2 137524 2incB 322 3.261 a.25.1.2 137525 3dhiB 327 4.011 3ge3B 327 4.680 2inpC 328 5.428 1zvdA 380 6.714 1t0qB 330 7.932 a.25.1.2 106221 3m66A 270 8.657 2oh3A 167 10.54 a.25.1.8 148774 1za0A 275 10.74 a.25.1.2 124774 2rccA 346 13.56 3ez0A 225 15.34 1otkA 249 16.37 a.25.1.2 93521 1w63A 618 16.97 i.23.1.1 109192 3dlwA 411 17.11 1oq9A 363 22.33 a.25.1.2 87257 1jk0B 345 23.64 a.25.1.2 63143 2b3yA 888 26.09 c.8.2.1,c.83.1.1 127803,127804 2fzfA 175 27.41 a.25.1.1 134437 2wm8A 187 28.61 3kzqA 208 30.14 2zcoA 293 31.03 1s6yA 450 32.16 c.2.1.5,d.162.1.2 105314,105315 2d5rB 116 32.23 d.370.1.1 146467 1wy0A 342 32.93 2pkeA 251 33.40 2v95A 371 35.90 1c4zA 358 40.30 d.148.1.1 41766 1itwA 741 41.89 c.77.1.2 76793 1ee4A 423 42.59 a.118.1.1 19128 2uw1A 338 44.05 1ca1A 370 46.36 a.124.1.1,b.12.1.3 19340,23648 2qgsA 225 47.60 a.211.1.1 150782 1iirA 415 47.80 c.87.1.5 62453 3h4tA 404 51.44 1f5qB 252 53.18 a.74.1.1,a.74.1.1 18362,18363 3ct5A 159 57.42 1lj9A 144 57.59 a.4.5.28 78035 1t0qA 498 59.89 a.25.1.2 106220 1rrvA 416 60.49 c.87.1.5 105083 1vz0A 230 63.25 a.4.14.1,d.268.1.1 108929,108930 2w31A 162 63.51 1mxrA 375 64.80 a.25.1.2 85197 1ztcA 221 65.85 d.157.1.11 125635 1yfsA 465 68.47 a.203.1.1,d.104.1.1 123088,123089 1zp2A 235 68.81 1p2xA 159 69.06 a.40.1.1 104062 3dhiA 500 69.11 3h1dA 405 69.54 1u09A 476 71.28 e.8.1.4 107545 3bsoA 510 72.19 1yxaA 398 73.99 3ia7A 402 74.83 3ei9A 432 75.18 3hd5A 195 75.56 3bfxA 296 76.64 c.37.1.5 155239 1mhyB 395 77.36 a.25.1.2 16781 1dd9A 338 77.73 e.13.1.1 43254 3f7jA 276 78.11 3cnhA 200 79.07 2vdxA 373 80.32 3f4rA 226 80.77 3h93A 192 81.42 3fydA 263 83.70 2gfsA 372 83.94 d.144.1.7 135109 3fcrA 458 84.23 3goqA 310 84.59 1bedA 181 85.51 c.47.1.13 90330 2zxrA 666 89.24