# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 3.05e-22 3ddeA 239 6.84e-22 1yakA 263 6.88e-22 a.132.1.3 122833 2rd3A 223 9.95e-22 3ibxA 221 1.21e-21 1tyhA 248 1.83e-21 a.132.1.3 107458 3mvuA 226 2.48e-21 1rcwA 231 4.12e-21 a.132.1.4 97299 1uddA 226 4.67e-21 a.132.1.3 107776 1z72A 225 6.10e-21 a.132.1.3 124583 2a2mA 258 1.45e-20 a.132.1.3 126039 3hlxA 258 1.65e-20 1rtwA 220 3.55e-20 a.132.1.3 97823 1otvA 259 4.77e-20 a.132.1.4 93526 2qzcA 214 1.05e-19 2f2gA 221 1.86e-19 a.132.1.3 132816 3hmlA 258 4.92e-19 2q4xA 221 7.80e-18 a.132.1.3 139880 3hnhA 258 1.88e-17 3bjdA 332 9.89e-17 1wwmA 190 3.03e-12 a.132.1.3 121363 3b5oA 244 3.72e-10 1wzdA 215 1.28e-09 a.132.1.1 121493 1iw0A 215 4.72e-09 a.132.1.1 83720 3i9tA 263 1.64e-08 1n45A 233 3.39e-07 a.132.1.1 79981 1wovA 250 1.28e-06 a.132.1.1 121124 1sk7A 198 0.001422 a.132.1.2 105671 1j77A 209 0.002830 a.132.1.2 62674 2jcdA 345 0.03862 3ge3A 500 0.05724 3chhA 336 0.06537 1w68A 390 0.2139 a.25.1.2 109216 1kgnA 329 0.7462 a.25.1.2 68584 3dhzA 329 0.7601 a.25.1.2 157741 1syyA 346 1.204 a.25.1.2 106126 2itbA 206 1.439 a.25.1.7 147793 2incA 491 1.505 a.25.1.2 137524 3dhiB 327 1.736 2incB 322 2.012 a.25.1.2 137525 3ge3B 327 2.226 2inpA 494 3.772 1zvdA 380 5.078 1t0qB 330 5.360 a.25.1.2 106221 2inpC 328 7.189 3ee4A 323 7.783 1oq9A 363 8.084 a.25.1.2 87257 2oh3A 167 8.612 a.25.1.8 148774 3dhiA 500 10.03 1mxrA 375 10.50 a.25.1.2 85197 2wm8A 187 11.83 1za0A 275 12.84 a.25.1.2 124774 3ez0A 225 13.04 2rccA 346 13.12 3m66A 270 13.16 1c4zA 358 13.68 d.148.1.1 41766 1s6yA 450 14.02 c.2.1.5,d.162.1.2 105314,105315 1jk0B 345 15.67 a.25.1.2 63143 1ca1A 370 17.69 a.124.1.1,b.12.1.3 19340,23648 3kzqA 208 20.53 1f5qB 252 20.71 a.74.1.1,a.74.1.1 18362,18363 1itwA 741 20.91 c.77.1.2 76793 1otkA 249 20.96 a.25.1.2 93521 1w63A 618 23.06 i.23.1.1 109192 2d5rB 116 24.98 d.370.1.1 146467 2fzfA 175 25.01 a.25.1.1 134437 2gfsA 372 25.40 d.144.1.7 135109 2zcoA 293 25.89 1wy0A 342 26.11 1ee4A 423 26.70 a.118.1.1 19128 2b3yA 888 26.90 c.8.2.1,c.83.1.1 127803,127804 2uw1A 338 28.74 2qgsA 225 32.29 a.211.1.1 150782 2jgzB 260 32.44 3ei9A 432 34.49 3dlwA 411 34.76 1t0qA 498 35.72 a.25.1.2 106220 3h4tA 404 35.91 3hd5A 195 40.99 1u09A 476 42.52 e.8.1.4 107545 3h1dA 405 43.03 1mhyB 395 43.14 a.25.1.2 16781 1p2xA 159 43.86 a.40.1.1 104062 2i6xA 211 45.17 3h93A 192 53.23 1iirA 415 55.02 c.87.1.5 62453 1jdhA 529 56.91 a.118.1.1 66549 3f4rA 226 58.36 1vz0A 230 60.32 a.4.14.1,d.268.1.1 108929,108930 1lj9A 144 61.45 a.4.5.28 78035 2i53A 258 61.98 a.74.1.1,a.74.1.1 147505,147506 1i4aA 318 62.92 a.65.1.1 61681 2csgA 424 63.03 b.82.2.12 130768 1u7pA 164 63.22 c.108.1.17 113095 2in3A 216 63.60 2pkeA 251 64.36 1bedA 181 64.43 c.47.1.13 90330 1e8yA 966 65.03 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1hm6A 346 65.14 a.65.1.1 18147 2j2fA 363 67.72 3ia7A 402 69.53 1zp2A 235 70.95 2w96A 271 72.07 2igpA 120 72.13 2prrA 197 72.69 a.152.1.3 149803 1wpaA 114 73.20 h.4.17.1 121145 1yfsA 465 76.18 a.203.1.1,d.104.1.1 123088,123089 3bq3A 270 77.54 1xawA 140 79.19 h.4.17.1 121831 1aisB 200 79.95 a.74.1.2,a.74.1.2 18384,18385 1kz7A 353 80.97 a.87.1.1,b.55.1.1 73333,73334 1ztcA 221 81.19 d.157.1.11 125635 3hiuA 166 81.31 2zhjA 322 82.54 2sqcA 631 83.99 a.102.4.2,a.102.4.2 18854,18855 3lgbA 194 84.23 3k01A 412 85.42 1txdA 385 85.76 a.87.1.1,b.55.1.1 107422,107423 1k07A 263 86.46 d.157.1.1 77218 3bptA 363 87.90 3g15A 401 89.18 2xd3A 416 89.33 2q0zX 339 89.77 a.289.1.1,b.1.18.22 149993,149994 1rrvA 416 89.92 c.87.1.5 105083 3goqA 310 89.94