# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 5.20e-20 3ddeA 239 1.02e-19 3ibxA 221 1.56e-19 1yakA 263 2.26e-19 a.132.1.3 122833 2rd3A 223 2.30e-19 3mvuA 226 3.17e-19 1tyhA 248 4.88e-19 a.132.1.3 107458 1rcwA 231 4.97e-19 a.132.1.4 97299 1z72A 225 5.20e-19 a.132.1.3 124583 1uddA 226 8.81e-19 a.132.1.3 107776 3hlxA 258 2.04e-18 2a2mA 258 2.05e-18 a.132.1.3 126039 1rtwA 220 2.65e-18 a.132.1.3 97823 1otvA 259 3.60e-18 a.132.1.4 93526 2qzcA 214 1.13e-17 2f2gA 221 1.34e-17 a.132.1.3 132816 3hmlA 258 5.28e-17 2q4xA 221 5.06e-16 a.132.1.3 139880 3hnhA 258 1.03e-15 3bjdA 332 2.81e-14 1wwmA 190 3.45e-11 a.132.1.3 121363 3b5oA 244 1.25e-09 1wzdA 215 8.35e-09 a.132.1.1 121493 1iw0A 215 9.29e-09 a.132.1.1 83720 3i9tA 263 9.23e-08 1n45A 233 9.50e-07 a.132.1.1 79981 1wovA 250 4.02e-06 a.132.1.1 121124 1sk7A 198 0.001287 a.132.1.2 105671 1j77A 209 0.003329 a.132.1.2 62674 2jcdA 345 0.1526 3chhA 336 0.2322 3ge3A 500 0.3251 1w68A 390 0.8539 a.25.1.2 109216 2itbA 206 2.314 a.25.1.7 147793 1kgnA 329 2.349 a.25.1.2 68584 1syyA 346 2.673 a.25.1.2 106126 3dhzA 329 3.725 a.25.1.2 157741 2inpA 494 4.285 3dhiB 327 4.397 3ge3B 327 4.429 3ez0A 225 4.479 1za0A 275 4.764 a.25.1.2 124774 2incA 491 4.801 a.25.1.2 137524 2incB 322 7.428 a.25.1.2 137525 2uw1A 338 7.544 2inpC 328 7.728 3m66A 270 8.736 1t0qB 330 10.67 a.25.1.2 106221 1zvdA 380 10.98 1jk0B 345 11.72 a.25.1.2 63143 1oq9A 363 12.33 a.25.1.2 87257 1w63A 618 12.48 i.23.1.1 109192 2d5rB 116 12.85 d.370.1.1 146467 2zcoA 293 13.35 2rccA 346 15.36 2oh3A 167 15.54 a.25.1.8 148774 3ee4A 323 16.85 2wm8A 187 18.28 3hd5A 195 18.66 1mxrA 375 18.77 a.25.1.2 85197 1otkA 249 21.86 a.25.1.2 93521 1s6yA 450 22.21 c.2.1.5,d.162.1.2 105314,105315 1t0qA 498 23.86 a.25.1.2 106220 1itwA 741 24.11 c.77.1.2 76793 2j2fA 363 25.17 3go9A 492 26.87 1f5qB 252 28.44 a.74.1.1,a.74.1.1 18362,18363 2jgzB 260 31.25 2qgsA 225 33.23 a.211.1.1 150782 2c4mA 796 34.49 1ztcA 221 35.07 d.157.1.11 125635 2fgeA 995 35.11 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3h93A 192 35.85 3cwwA 990 35.87 2f2cA 254 37.84 a.74.1.1,a.74.1.1 132805,132806 3kzqA 208 38.70 2in3A 216 38.90 2gfsA 372 40.65 d.144.1.7 135109 2go7A 207 41.49 c.108.1.6 135434 1bedA 181 43.70 c.47.1.13 90330 1qsaA 618 44.50 a.118.5.1,d.2.1.6 19182,36988 1mhyB 395 44.80 a.25.1.2 16781 3f4rA 226 45.39 3hiuA 166 46.36 2ovkC 159 47.38 1topA 162 49.16 a.39.1.5 17223 3dlwA 411 49.43 3cnhA 200 51.19 3n7qA 310 52.06 3bq3A 270 53.52 1wy0A 342 56.32 2b3yA 888 59.02 c.8.2.1,c.83.1.1 127803,127804 3dhiA 500 59.02 1mtyB 384 59.02 a.25.1.2 16740 3ei9A 432 59.64 3e4zA 990 59.98 3ct5A 159 62.07 3hmuA 472 62.44 3b57A 209 62.73 a.211.1.1 154835 1hw1A 239 62.83 a.4.5.6,a.78.1.1 16111,18441 2de3A 365 63.12 1aisB 200 64.51 a.74.1.2,a.74.1.2 18384,18385 1dd9A 338 65.20 e.13.1.1 43254 1e8yA 966 66.96 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2d5vA 164 67.04 1ca1A 370 67.37 a.124.1.1,b.12.1.3 19340,23648 1p2xA 159 67.82 a.40.1.1 104062 1yfsA 465 68.20 a.203.1.1,d.104.1.1 123088,123089 2croA 71 70.20 a.35.1.2 17038 2i53A 258 70.23 a.74.1.1,a.74.1.1 147505,147506 2gmwA 211 70.66 c.108.1.19 147137 3l9sA 191 70.66 3lgbA 194 71.99 1u7pA 164 72.26 c.108.1.17 113095 2fjrA 189 76.60 1zp2A 235 77.21 2sqcA 631 77.44 a.102.4.2,a.102.4.2 18854,18855 3fcrA 458 77.91 3ljxA 288 80.17 1dqeA 137 82.53 a.39.2.1 17388 3l8hA 179 83.84 3f4sA 226 84.25 2o2xA 218 84.46 c.108.1.19 148564 1x42A 232 84.52 c.108.1.1 121677 1r69 69 85.16 1utxA 66 85.36 a.35.1.3 108034 2cro 71 85.54 2q8nA 460 85.81 2i6xA 211 86.21 3fzqA 274 87.17 3hucA 360 88.56