# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qcxA	263	6.77e-18		
3ddeA	239	1.39e-17		
1yakA	263	1.73e-17	a.132.1.3	122833
3ibxA	221	1.96e-17		
1rcwA	231	2.03e-17	a.132.1.4	97299
3mvuA	226	2.09e-17		
2rd3A	223	3.12e-17		
1z72A	225	4.38e-17	a.132.1.3	124583
1tyhA	248	4.90e-17	a.132.1.3	107458
1uddA	226	5.79e-17	a.132.1.3	107776
3hlxA	258	1.56e-16		
2a2mA	258	1.67e-16	a.132.1.3	126039
1rtwA	220	2.06e-16	a.132.1.3	97823
1otvA	259	3.48e-16	a.132.1.4	93526
2qzcA	214	4.47e-16		
3hmlA	258	1.13e-15		
2f2gA	221	1.38e-15	a.132.1.3	132816
3hnhA	258	1.26e-14		
3bjdA	332	3.35e-14		
2q4xA	221	5.82e-14	a.132.1.3	139880
1wwmA	190	5.50e-10	a.132.1.3	121363
3b5oA	244	6.82e-09		
1wzdA	215	1.02e-07	a.132.1.1	121493
1iw0A	215	1.04e-07	a.132.1.1	83720
3i9tA	263	1.32e-06		
1n45A	233	7.81e-06	a.132.1.1	79981
1wovA	250	4.46e-05	a.132.1.1	121124
1j77A	209	0.004449	a.132.1.2	62674
1sk7A	198	0.004648	a.132.1.2	105671
2jcdA	345	0.4660		
3chhA	336	0.5325		
2itbA	206	0.8701	a.25.1.7	147793
1w68A	390	1.205	a.25.1.2	109216
2inpA	494	1.409		
3ge3A	500	1.414		
1kgnA	329	5.063	a.25.1.2	68584
3dhzA	329	5.234	a.25.1.2	157741
3dhiB	327	5.323		
1zvdA	380	7.589		
1za0A	275	7.720	a.25.1.2	124774
1syyA	346	8.143	a.25.1.2	106126
1oq9A	363	10.32	a.25.1.2	87257
3ge3B	327	10.34		
3ez0A	225	10.58		
2oh3A	167	10.87	a.25.1.8	148774
2uw1A	338	12.02		
1otkA	249	12.69	a.25.1.2	93521
1s6yA	450	13.08	c.2.1.5,d.162.1.2	105314,105315
2incA	491	16.22	a.25.1.2	137524
2fzfA	175	16.82	a.25.1.1	134437
2inpC	328	17.12		
2incB	322	18.97	a.25.1.2	137525
3m66A	270	23.03		
3kzqA	208	27.73		
1t0qB	330	29.09	a.25.1.2	106221
2wm8A	187	29.14		
1ca1A	370	30.54	a.124.1.1,b.12.1.3	19340,23648
1vz0A	230	30.63	a.4.14.1,d.268.1.1	108929,108930
3ee4A	323	31.88		
1qsaA	618	33.80	a.118.5.1,d.2.1.6	19182,36988
1jk0B	345	35.63	a.25.1.2	63143
2zcoA	293	35.95		
2j2fA	363	37.79		
1w63A	618	38.23	i.23.1.1	109192
3bsoA	510	38.35		
3ia7A	402	40.84		
2sqcA	631	41.23	a.102.4.2,a.102.4.2	18854,18855
1c4zA	358	41.66	d.148.1.1	41766
1ee4A	423	43.22	a.118.1.1	19128
1wy0A	342	43.70		
1wpaA	114	47.62	h.4.17.1	121145
1xawA	140	50.92	h.4.17.1	121831
2d5rB	116	51.20	d.370.1.1	146467
2in3A	216	52.52		
2b3yA	888	53.10	c.8.2.1,c.83.1.1	127803,127804
3f4rA	226	56.27		
1ztcA	221	61.72	d.157.1.11	125635
3dlwA	411	63.79		
2de3A	365	65.45		
3e4zA	990	66.91		
1yuzA	202	69.20	a.25.1.1,g.41.5.1	124077,124078
3d3yA	425	75.28		
3kj0A	158	75.49		
2gfsA	372	76.38	d.144.1.7	135109
3h1dA	405	78.81		
1iirA	415	79.82	c.87.1.5	62453
3lgbA	194	80.01		
1i4aA	318	80.93	a.65.1.1	61681
1p2xA	159	81.00	a.40.1.1	104062
1u09A	476	82.01	e.8.1.4	107545
1rrvA	416	84.88	c.87.1.5	105083
2g47A	990	86.92		
3h93A	192	89.86