# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qcxA	263	6.51e-18		
3ibxA	221	1.73e-17		
1yakA	263	1.78e-17	a.132.1.3	122833
3ddeA	239	1.94e-17		
3mvuA	226	2.20e-17		
2rd3A	223	2.79e-17		
1rcwA	231	3.39e-17	a.132.1.4	97299
1tyhA	248	4.70e-17	a.132.1.3	107458
1z72A	225	4.75e-17	a.132.1.3	124583
1uddA	226	6.55e-17	a.132.1.3	107776
3hlxA	258	1.88e-16		
2a2mA	258	2.03e-16	a.132.1.3	126039
1rtwA	220	2.60e-16	a.132.1.3	97823
1otvA	259	3.73e-16	a.132.1.4	93526
2qzcA	214	4.86e-16		
3hmlA	258	1.46e-15		
2f2gA	221	1.66e-15	a.132.1.3	132816
3hnhA	258	1.81e-14		
3bjdA	332	4.98e-14		
2q4xA	221	8.43e-14	a.132.1.3	139880
1wwmA	190	6.07e-10	a.132.1.3	121363
3b5oA	244	1.14e-08		
1wzdA	215	1.20e-07	a.132.1.1	121493
1iw0A	215	1.33e-07	a.132.1.1	83720
3i9tA	263	1.64e-06		
1n45A	233	1.02e-05	a.132.1.1	79981
1wovA	250	5.14e-05	a.132.1.1	121124
1sk7A	198	0.006708	a.132.1.2	105671
1j77A	209	0.006752	a.132.1.2	62674
3chhA	336	0.4130		
2jcdA	345	0.4869		
2itbA	206	0.8772	a.25.1.7	147793
3ge3A	500	1.457		
2inpA	494	1.616		
1w68A	390	2.070	a.25.1.2	109216
3dhiB	327	6.300		
1za0A	275	7.385	a.25.1.2	124774
1zvdA	380	7.685		
2oh3A	167	8.998	a.25.1.8	148774
1kgnA	329	10.18	a.25.1.2	68584
3dhzA	329	10.34	a.25.1.2	157741
1otkA	249	11.07	a.25.1.2	93521
3ez0A	225	11.18		
3ge3B	327	11.79		
1oq9A	363	13.25	a.25.1.2	87257
1syyA	346	13.75	a.25.1.2	106126
2fzfA	175	14.95	a.25.1.1	134437
1s6yA	450	16.03	c.2.1.5,d.162.1.2	105314,105315
2uw1A	338	16.42		
2incA	491	16.43	a.25.1.2	137524
2inpC	328	16.95		
2incB	322	17.87	a.25.1.2	137525
3m66A	270	24.80		
1t0qB	330	25.52	a.25.1.2	106221
1w63A	618	30.43	i.23.1.1	109192
2zcoA	293	30.56		
1qsaA	618	32.52	a.118.5.1,d.2.1.6	19182,36988
1ca1A	370	33.48	a.124.1.1,b.12.1.3	19340,23648
3ia7A	402	34.00		
3bsoA	510	34.68		
3kzqA	208	37.65		
1vz0A	230	38.53	a.4.14.1,d.268.1.1	108929,108930
2wm8A	187	41.50		
2j2fA	363	42.94		
1c4zA	358	44.99	d.148.1.1	41766
2d5rB	116	49.04	d.370.1.1	146467
1wy0A	342	53.38		
3ee4A	323	53.82		
2de3A	365	55.19		
1jk0B	345	55.52	a.25.1.2	63143
1yuzA	202	55.63	a.25.1.1,g.41.5.1	124077,124078
1xawA	140	57.67	h.4.17.1	121831
2b3yA	888	58.41	c.8.2.1,c.83.1.1	127803,127804
1wpaA	114	59.15	h.4.17.1	121145
2in3A	216	61.74		
1iirA	415	62.07	c.87.1.5	62453
1ztcA	221	65.13	d.157.1.11	125635
3h4tA	404	66.58		
1ee4A	423	68.00	a.118.1.1	19128
2gfsA	372	68.32	d.144.1.7	135109
2sqcA	631	71.31	a.102.4.2,a.102.4.2	18854,18855
1rrvA	416	72.07	c.87.1.5	105083
1dd9A	338	73.12	e.13.1.1	43254
3d3yA	425	73.40		
2bfwA	200	79.93	c.87.1.8	128456
3h1dA	405	80.29		
3kj0A	158	80.76		
3hn0A	283	86.28		
3dlwA	411	87.50		
1g3mA	294	88.44	c.37.1.5	83268