# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qcxA	263	1.63e-17		
3ibxA	221	3.85e-17		
3ddeA	239	3.97e-17		
1yakA	263	4.33e-17	a.132.1.3	122833
3mvuA	226	5.05e-17		
1rcwA	231	5.11e-17	a.132.1.4	97299
2rd3A	223	6.03e-17		
1z72A	225	1.01e-16	a.132.1.3	124583
1tyhA	248	1.02e-16	a.132.1.3	107458
1uddA	226	1.43e-16	a.132.1.3	107776
2a2mA	258	3.38e-16	a.132.1.3	126039
3hlxA	258	3.97e-16		
1rtwA	220	5.63e-16	a.132.1.3	97823
1otvA	259	6.54e-16	a.132.1.4	93526
2qzcA	214	1.14e-15		
3hmlA	258	2.30e-15		
2f2gA	221	2.96e-15	a.132.1.3	132816
3hnhA	258	2.57e-14		
3bjdA	332	7.22e-14		
2q4xA	221	1.46e-13	a.132.1.3	139880
1wwmA	190	1.09e-09	a.132.1.3	121363
3b5oA	244	1.44e-08		
1wzdA	215	1.65e-07	a.132.1.1	121493
1iw0A	215	1.70e-07	a.132.1.1	83720
3i9tA	263	2.01e-06		
1n45A	233	1.23e-05	a.132.1.1	79981
1wovA	250	6.39e-05	a.132.1.1	121124
1sk7A	198	0.006388	a.132.1.2	105671
1j77A	209	0.006861	a.132.1.2	62674
2jcdA	345	0.3678		
3chhA	336	0.4996		
2itbA	206	1.009	a.25.1.7	147793
3ge3A	500	1.468		
2inpA	494	2.005		
1w68A	390	2.249	a.25.1.2	109216
3dhiB	327	6.893		
1kgnA	329	7.425	a.25.1.2	68584
3dhzA	329	8.242	a.25.1.2	157741
1zvdA	380	8.353		
1otkA	249	10.27	a.25.1.2	93521
2oh3A	167	10.37	a.25.1.8	148774
3ez0A	225	10.71		
3ge3B	327	11.72		
1za0A	275	11.78	a.25.1.2	124774
1s6yA	450	14.01	c.2.1.5,d.162.1.2	105314,105315
2incA	491	14.85	a.25.1.2	137524
2fzfA	175	17.18	a.25.1.1	134437
1oq9A	363	17.66	a.25.1.2	87257
2inpC	328	18.86		
1syyA	346	19.67	a.25.1.2	106126
2incB	322	23.12	a.25.1.2	137525
2wm8A	187	27.82		
1vz0A	230	28.35	a.4.14.1,d.268.1.1	108929,108930
3ia7A	402	28.45		
1t0qB	330	31.03	a.25.1.2	106221
2uw1A	338	31.99		
1w63A	618	35.79	i.23.1.1	109192
1ca1A	370	35.80	a.124.1.1,b.12.1.3	19340,23648
3m66A	270	38.16		
2zcoA	293	38.55		
1iirA	415	45.23	c.87.1.5	62453
1qsaA	618	47.21	a.118.5.1,d.2.1.6	19182,36988
3kzqA	208	48.14		
2de3A	365	48.30		
1c4zA	358	48.74	d.148.1.1	41766
3h4tA	404	51.60		
1wpaA	114	52.20	h.4.17.1	121145
1jk0B	345	52.36	a.25.1.2	63143
3bsoA	510	53.42		
1xawA	140	54.37	h.4.17.1	121831
1wy0A	342	54.75		
1rrvA	416	55.95	c.87.1.5	105083
3ee4A	323	57.19		
2vsnA	568	59.06		
2d5rB	116	61.15	d.370.1.1	146467
2bfwA	200	66.18	c.87.1.8	128456
3hn0A	283	68.04		
2in3A	216	70.08		
1ee4A	423	70.80	a.118.1.1	19128
2b3yA	888	71.35	c.8.2.1,c.83.1.1	127803,127804
1hw1A	239	72.82	a.4.5.6,a.78.1.1	16111,18441
3dlwA	411	74.21		
2iw1A	374	75.56	c.87.1.8	137738
3d3yA	425	76.66		
1dd9A	338	78.56	e.13.1.1	43254
1ztcA	221	82.06	d.157.1.11	125635
1yuzA	202	82.17	a.25.1.1,g.41.5.1	124077,124078
3kj0A	158	83.82		
2gfsA	372	84.32	d.144.1.7	135109
2j2fA	363	84.80		
2sqcA	631	85.87	a.102.4.2,a.102.4.2	18854,18855
1zp2A	235	86.66		
1i4aA	318	87.04	a.65.1.1	61681