# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 1.07e-22 2rd3A 223 2.42e-22 3mvuA 226 2.70e-22 1yakA 263 3.72e-22 a.132.1.3 122833 3ddeA 239 4.18e-22 3ibxA 221 5.19e-22 1tyhA 248 5.68e-22 a.132.1.3 107458 1rcwA 231 6.73e-22 a.132.1.4 97299 1uddA 226 7.77e-22 a.132.1.3 107776 1z72A 225 2.87e-21 a.132.1.3 124583 3hlxA 258 6.99e-21 1rtwA 220 8.05e-21 a.132.1.3 97823 2a2mA 258 1.02e-20 a.132.1.3 126039 1otvA 259 3.38e-20 a.132.1.4 93526 2f2gA 221 9.59e-20 a.132.1.3 132816 2qzcA 214 1.61e-19 3hmlA 258 3.80e-19 2q4xA 221 1.88e-18 a.132.1.3 139880 3hnhA 258 1.20e-17 3bjdA 332 4.71e-16 1wwmA 190 1.19e-12 a.132.1.3 121363 3b5oA 244 7.58e-12 1wzdA 215 3.02e-10 a.132.1.1 121493 1iw0A 215 5.97e-10 a.132.1.1 83720 3i9tA 263 8.00e-09 1n45A 233 5.69e-08 a.132.1.1 79981 1wovA 250 5.57e-07 a.132.1.1 121124 1sk7A 198 0.000258 a.132.1.2 105671 1j77A 209 0.000393 a.132.1.2 62674 1w68A 390 0.008421 a.25.1.2 109216 2jcdA 345 0.009229 1syyA 346 0.01313 a.25.1.2 106126 2itbA 206 0.04390 a.25.1.7 147793 3chhA 336 0.07578 3dhzA 329 0.0997 a.25.1.2 157741 1kgnA 329 0.2122 a.25.1.2 68584 3ee4A 323 0.6579 2rccA 346 0.7757 2vsnA 568 0.9949 3ez0A 225 1.243 1mxrA 375 1.537 a.25.1.2 85197 1otkA 249 2.054 a.25.1.2 93521 2incB 322 3.033 a.25.1.2 137525 1za0A 275 4.507 a.25.1.2 124774 3m66A 270 4.727 3ge3B 327 5.298 2oh3A 167 5.359 a.25.1.8 148774 3kzqA 208 5.369 2uw1A 338 5.871 1jk0B 345 5.995 a.25.1.2 63143 1vbjA 281 6.076 3ge3A 500 7.256 3f7jA 276 8.829 2inpC 328 8.914 2j2fA 363 10.46 1rrvA 416 10.93 c.87.1.5 105083 1iirA 415 12.18 c.87.1.5 62453 2zcoA 293 13.02 3hd5A 195 13.95 3ia7A 402 14.04 1oq9A 363 14.15 a.25.1.2 87257 3dhiB 327 15.79 1bedA 181 16.42 c.47.1.13 90330 2in3A 216 16.85 3h4tA 404 17.76 2oc5A 244 20.36 a.25.1.6 148720 1mhyB 395 20.78 a.25.1.2 16781 1ca1A 370 22.19 a.124.1.1,b.12.1.3 19340,23648 1mtyB 384 22.35 a.25.1.2 16740 1fvkA 189 24.27 c.47.1.13 90351 1f0kA 364 25.50 c.87.1.2 35465 2iw1A 374 26.07 c.87.1.8 137738 2bfwA 200 26.51 c.87.1.8 128456 1jixA 351 27.77 c.87.1.1 63081 3gwbA 434 28.54 1cliA 345 28.63 d.79.4.1,d.139.1.1 39816,41459 2fzfA 175 29.29 a.25.1.1 134437 3d3yA 425 30.40 1w63A 618 31.83 i.23.1.1 109192 1vk2A 204 32.27 c.18.1.2 100845 2wzmA 283 32.45 3h93A 192 33.96 1k07A 263 36.28 d.157.1.1 77218 1p2xA 159 38.02 a.40.1.1 104062 1t0qB 330 38.62 a.25.1.2 106221 2vccA 891 38.71 1yzxA 226 42.40 3k01A 412 43.12 3kasA 640 44.07 1ztcA 221 45.59 d.157.1.11 125635 1l7mA 211 45.85 c.108.1.4 73664 3lgbA 194 46.20 1rvv1 154 47.95 1ezfA 340 47.98 a.128.1.2 19440 3m9lA 205 48.69 2sqcA 631 48.73 a.102.4.2,a.102.4.2 18854,18855 3ivmA 693 52.46 1hqkA 154 52.60 c.16.1.1 65902 1kwmA 402 53.73 c.56.5.1,d.58.3.1 73079,73080 2wm8A 187 55.62 3f4rA 226 60.96 2ekdA 207 61.39 2v9yA 334 66.80 1qb7A 236 69.45 c.61.1.1 34087 3csvA 333 69.94 2q8nA 460 71.53 3l9sA 191 71.56 2i53A 258 72.60 a.74.1.1,a.74.1.1 147505,147506 1z82A 335 74.94 2gekA 406 75.77 3cq0A 339 78.29 1qwdA 177 78.40 b.60.1.1 96471 1hw6A 278 80.21 c.1.7.1 61296 2ccmA 191 82.00 1nv8A 284 82.10 c.66.1.30 86224 3fimB 566 83.29 1p9eA 331 84.40 d.157.1.5 104088 3dtgA 372 86.26 2v95A 371 86.34 2b0cA 206 86.99 c.108.1.2 127633 2zo9B 274 88.02 d.159.1.11 154714 3l9vA 189 88.14