# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 7.09e-23 3ddeA 239 1.91e-22 2rd3A 223 2.71e-22 3ibxA 221 3.12e-22 3mvuA 226 4.53e-22 1yakA 263 4.56e-22 a.132.1.3 122833 1tyhA 248 5.73e-22 a.132.1.3 107458 1rcwA 231 7.26e-22 a.132.1.4 97299 1uddA 226 7.50e-22 a.132.1.3 107776 1z72A 225 2.73e-21 a.132.1.3 124583 1otvA 259 2.77e-21 a.132.1.4 93526 3hlxA 258 3.99e-21 2a2mA 258 6.66e-21 a.132.1.3 126039 1rtwA 220 1.54e-20 a.132.1.3 97823 2f2gA 221 1.92e-20 a.132.1.3 132816 2qzcA 214 5.24e-20 3hmlA 258 1.79e-19 3hnhA 258 2.45e-18 2q4xA 221 3.12e-18 a.132.1.3 139880 3bjdA 332 4.90e-17 1wwmA 190 7.09e-13 a.132.1.3 121363 3b5oA 244 2.84e-10 1iw0A 215 8.36e-10 a.132.1.1 83720 1wzdA 215 8.37e-10 a.132.1.1 121493 3i9tA 263 2.17e-08 1n45A 233 1.63e-07 a.132.1.1 79981 1wovA 250 9.29e-07 a.132.1.1 121124 1sk7A 198 0.000206 a.132.1.2 105671 1j77A 209 0.000399 a.132.1.2 62674 2jcdA 345 0.09449 3chhA 336 0.09720 3ge3A 500 0.1196 1w68A 390 0.3971 a.25.1.2 109216 3dhzA 329 0.4617 a.25.1.2 157741 1syyA 346 1.012 a.25.1.2 106126 1kgnA 329 1.324 a.25.1.2 68584 2inpA 494 1.432 2itbA 206 1.568 a.25.1.7 147793 2incA 491 1.817 a.25.1.2 137524 3dhiB 327 3.352 1zvdA 380 3.366 3ee4A 323 3.718 2inpC 328 4.430 2incB 322 4.588 a.25.1.2 137525 3ge3B 327 5.356 3ez0A 225 6.660 1s6yA 450 8.025 c.2.1.5,d.162.1.2 105314,105315 1ca1A 370 8.250 a.124.1.1,b.12.1.3 19340,23648 1otkA 249 9.016 a.25.1.2 93521 1za0A 275 10.38 a.25.1.2 124774 1c4zA 358 12.28 d.148.1.1 41766 2rccA 346 17.25 2oh3A 167 17.42 a.25.1.8 148774 2uw1A 338 18.32 2fzfA 175 19.58 a.25.1.1 134437 1wpaA 114 19.75 h.4.17.1 121145 1w63A 618 21.22 i.23.1.1 109192 1jk0B 345 21.23 a.25.1.2 63143 1t0qB 330 22.60 a.25.1.2 106221 1xawA 140 24.15 h.4.17.1 121831 3m66A 270 25.12 1mhyB 395 27.10 a.25.1.2 16781 2wm8A 187 27.32 2d5rB 116 27.72 d.370.1.1 146467 3dlwA 411 28.07 2b3yA 888 29.18 c.8.2.1,c.83.1.1 127803,127804 3kzqA 208 29.63 1ztcA 221 32.25 d.157.1.11 125635 1oq9A 363 34.67 a.25.1.2 87257 1mxrA 375 36.31 a.25.1.2 85197 3dhiA 500 36.89 3ia7A 402 37.30 3h1dA 405 38.14 2vofA 157 38.39 2in3A 216 40.15 3hd5A 195 40.65 1mtyB 384 41.66 a.25.1.2 16740 3h93A 192 42.66 2gfsA 372 46.19 d.144.1.7 135109 1ezfA 340 47.14 a.128.1.2 19440 3bsoA 510 49.11 2v95A 371 50.42 2csgA 424 51.20 b.82.2.12 130768 3cnhA 200 53.15 3lgbA 194 55.63 2qgsA 225 56.83 a.211.1.1 150782 1lj9A 144 57.36 a.4.5.28 78035 1g3mA 294 58.08 c.37.1.5 83268 1ee4A 423 59.22 a.118.1.1 19128 1p2xA 159 59.54 a.40.1.1 104062 3hn0A 283 60.91 3bptA 363 64.60 1yxaA 398 64.82 1bedA 181 65.07 c.47.1.13 90330 2jgzB 260 67.54 2sqcA 631 67.66 a.102.4.2,a.102.4.2 18854,18855 2j2fA 363 68.93 1t0qA 498 69.68 a.25.1.2 106220 3bfxA 296 70.24 c.37.1.5 155239 2zcoA 293 71.16 1yuzA 202 72.26 a.25.1.1,g.41.5.1 124077,124078 2vdxA 373 73.98 2croA 71 75.77 a.35.1.2 17038 2pkeA 251 76.20 1eu8A 409 76.76 c.94.1.1 59502 1iirA 415 77.08 c.87.1.5 62453 1itwA 741 77.20 c.77.1.2 76793 2go7A 207 78.13 c.108.1.6 135434 2pr7A 137 79.56 3kj0A 158 79.85 2q8nA 460 81.36 1hw1A 239 84.22 a.4.5.6,a.78.1.1 16111,18441 3ct5A 159 84.28 2hoqA 241 84.63 2i6xA 211 85.85 1yzxA 226 85.99 3go9A 492 87.56