# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3ddeA 239 2.58e-22 2qcxA 263 2.81e-22 3ibxA 221 1.32e-21 2rd3A 223 1.54e-21 3mvuA 226 1.67e-21 1yakA 263 1.92e-21 a.132.1.3 122833 1rcwA 231 2.56e-21 a.132.1.4 97299 1uddA 226 2.82e-21 a.132.1.3 107776 1tyhA 248 2.87e-21 a.132.1.3 107458 1z72A 225 8.32e-21 a.132.1.3 124583 1otvA 259 1.02e-20 a.132.1.4 93526 3hlxA 258 2.03e-20 2a2mA 258 3.13e-20 a.132.1.3 126039 1rtwA 220 3.99e-20 a.132.1.3 97823 2f2gA 221 8.67e-20 a.132.1.3 132816 2qzcA 214 2.06e-19 3hmlA 258 4.30e-19 3hnhA 258 3.68e-18 2q4xA 221 1.06e-17 a.132.1.3 139880 3bjdA 332 6.22e-17 1wwmA 190 1.81e-12 a.132.1.3 121363 3b5oA 244 3.47e-10 1iw0A 215 3.25e-09 a.132.1.1 83720 1wzdA 215 3.41e-09 a.132.1.1 121493 3i9tA 263 5.96e-08 1n45A 233 5.18e-07 a.132.1.1 79981 1wovA 250 2.34e-06 a.132.1.1 121124 1sk7A 198 0.000482 a.132.1.2 105671 1j77A 209 0.001019 a.132.1.2 62674 2jcdA 345 0.02808 1w68A 390 0.2748 a.25.1.2 109216 3dhzA 329 0.2995 a.25.1.2 157741 1syyA 346 0.3207 a.25.1.2 106126 3chhA 336 0.6415 3ge3A 500 0.6883 1kgnA 329 0.7291 a.25.1.2 68584 2itbA 206 0.8629 a.25.1.7 147793 2incA 491 1.267 a.25.1.2 137524 3ge3B 327 1.838 2inpA 494 2.105 2uw1A 338 2.302 1zvdA 380 2.593 1mxrA 375 2.608 a.25.1.2 85197 3dhiB 327 4.581 2rccA 346 4.923 2inpC 328 4.924 2oh3A 167 6.204 a.25.1.8 148774 3ez0A 225 6.290 3ia7A 402 6.904 2qgsA 225 7.190 a.211.1.1 150782 1za0A 275 8.372 a.25.1.2 124774 3ee4A 323 10.59 1w63A 618 10.74 i.23.1.1 109192 2b5eA 504 11.70 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1iyeA 309 12.83 e.17.1.1 83786 2fzfA 175 13.13 a.25.1.1 134437 1oq9A 363 14.66 a.25.1.2 87257 1c4zA 358 14.77 d.148.1.1 41766 2wbyA 990 15.21 2aioA 269 15.97 d.157.1.1 126829 1otkA 249 16.20 a.25.1.2 93521 1sw2A 275 16.33 c.94.1.1 106064 2incB 322 18.01 a.25.1.2 137525 1jk0B 345 20.93 a.25.1.2 63143 1f0kA 364 23.08 c.87.1.2 35465 2vofA 157 23.85 2vsnA 568 25.93 3dtgA 372 27.11 1qs0A 407 27.28 c.36.1.11 31829 3m62A 968 29.24 3il6A 321 29.47 3h4tA 404 31.28 1t0qB 330 31.39 a.25.1.2 106221 2j2fA 363 32.18 2pkeA 251 32.91 3m66A 270 33.90 3jz6A 373 33.96 3bcxA 437 35.06 2b0cA 206 36.59 c.108.1.2 127633 1wpaA 114 36.62 h.4.17.1 121145 3kzqA 208 37.11 2ordA 397 37.68 2go7A 207 39.69 c.108.1.6 135434 2bfwA 200 39.77 c.87.1.8 128456 1odmA 331 39.91 b.82.2.1 86875 2uuqA 414 40.31 1czaN 917 41.11 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1xawA 140 43.60 h.4.17.1 121831 2gwhA 298 43.99 3cnhA 200 45.27 2d5rB 116 45.59 d.370.1.1 146467 3i6bA 180 45.88 3krwA 688 46.45 3dhiA 500 47.61 1vefA 395 48.25 c.67.1.4 120018 3h1dA 405 49.11 2wm8A 187 49.25 2i53A 258 49.25 a.74.1.1,a.74.1.1 147505,147506 3hn0A 283 50.11 3kofA 337 51.21 1g8lA 411 52.26 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1p2xA 159 52.70 a.40.1.1 104062 2b3yA 888 52.73 c.8.2.1,c.83.1.1 127803,127804 3bptA 363 52.87 2v95A 371 53.99 3il5A 343 54.07 2r2dA 276 56.55 1yuzA 202 57.23 a.25.1.1,g.41.5.1 124077,124078 2w9zA 257 57.31 3dthA 372 57.46 2qxfA 482 57.63 c.55.3.5 151455 1x42A 232 58.22 c.108.1.1 121677 2xd3A 416 58.55 1t0qA 498 59.15 a.25.1.2 106220 1g3mA 294 59.26 c.37.1.5 83268 1ezfA 340 59.27 a.128.1.2 19440 1ppjB 439 61.24 d.185.1.1,d.185.1.1 104254,104255 3b40A 417 61.78 1ca1A 370 61.85 a.124.1.1,b.12.1.3 19340,23648 2nl9A 157 61.93 2in3A 216 63.39 1e0tA 470 63.45 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2sqcA 631 64.43 a.102.4.2,a.102.4.2 18854,18855 1yxaA 398 64.49 3gc9A 370 67.38 3l0zA 350 67.61 3moeA 624 67.95 1qh5A 260 68.54 d.157.1.2 42057 2d5wA 603 70.04 1lj9A 144 70.39 a.4.5.28 78035 1us5A 314 71.45 c.94.1.1 99856 1hw1A 239 71.77 a.4.5.6,a.78.1.1 16111,18441 3mc1A 226 72.38 1us0A 316 75.08 c.1.7.1 99850 1wa5B 530 76.93 a.118.1.1 114432 3lgbA 194 77.24 1mhyB 395 77.34 a.25.1.2 16781 2o2xA 218 77.63 c.108.1.19 148564 1wy0A 342 78.59 2ivnA 330 79.22 3ispA 303 80.56 3hiuA 166 81.18 1rrvA 416 81.71 c.87.1.5 105083 2fug1 438 81.82 2de3A 365 82.10 3h7rA 331 82.17 2hoqA 241 83.18 2x58A 727 83.45 2xdtA 897 84.19 3icsA 588 84.54 1ztcA 221 85.64 d.157.1.11 125635 1siqA 392 86.21 a.29.3.1,e.6.1.1 105585,105586 1wx1A 335 86.22 2jjqA 425 86.36 2v6qA 173 86.40 2gmwA 211 88.94 c.108.1.19 147137 2jjeA 449 89.30 2f2hA 773 89.78 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821