# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 3.92e-23 1yakA 263 1.15e-22 a.132.1.3 122833 3ddeA 239 1.19e-22 2rd3A 223 1.38e-22 3ibxA 221 1.89e-22 1tyhA 248 2.73e-22 a.132.1.3 107458 3mvuA 226 3.80e-22 1rcwA 231 4.27e-22 a.132.1.4 97299 1uddA 226 6.34e-22 a.132.1.3 107776 1z72A 225 8.89e-22 a.132.1.3 124583 2a2mA 258 2.27e-21 a.132.1.3 126039 3hlxA 258 3.42e-21 1otvA 259 5.68e-21 a.132.1.4 93526 1rtwA 220 6.29e-21 a.132.1.3 97823 2qzcA 214 2.02e-20 2f2gA 221 2.54e-20 a.132.1.3 132816 3hmlA 258 1.45e-19 2q4xA 221 2.26e-18 a.132.1.3 139880 3hnhA 258 5.15e-18 3bjdA 332 3.97e-17 1wwmA 190 1.82e-12 a.132.1.3 121363 3b5oA 244 2.65e-10 1wzdA 215 1.20e-09 a.132.1.1 121493 1iw0A 215 3.59e-09 a.132.1.1 83720 3i9tA 263 2.08e-08 1n45A 233 5.01e-07 a.132.1.1 79981 1wovA 250 2.02e-06 a.132.1.1 121124 1sk7A 198 0.002314 a.132.1.2 105671 1j77A 209 0.006696 a.132.1.2 62674 3chhA 336 0.2082 2jcdA 345 0.2547 1w68A 390 0.2717 a.25.1.2 109216 3ge3A 500 0.3543 2itbA 206 1.391 a.25.1.7 147793 3dhzA 329 1.754 a.25.1.2 157741 1syyA 346 1.778 a.25.1.2 106126 1kgnA 329 2.612 a.25.1.2 68584 3ge3B 327 3.478 2incB 322 3.866 a.25.1.2 137525 3dhiB 327 4.726 1zvdA 380 4.888 2inpA 494 5.572 2oh3A 167 6.310 a.25.1.8 148774 1t0qB 330 7.021 a.25.1.2 106221 2rccA 346 10.87 3ee4A 323 11.00 2fzfA 175 11.47 a.25.1.1 134437 2incA 491 12.33 a.25.1.2 137524 1jk0B 345 15.14 a.25.1.2 63143 3ia7A 402 15.62 3h4tA 404 15.76 3m66A 270 16.45 2inpC 328 17.42 1za0A 275 17.88 a.25.1.2 124774 1mxrA 375 19.20 a.25.1.2 85197 1oq9A 363 19.41 a.25.1.2 87257 1rrvA 416 22.28 c.87.1.5 105083 1s6yA 450 24.98 c.2.1.5,d.162.1.2 105314,105315 3dlwA 411 25.00 1otkA 249 26.17 a.25.1.2 93521 1c4zA 358 27.04 d.148.1.1 41766 2wm8A 187 27.97 2uw1A 338 28.16 2d5rB 116 28.17 d.370.1.1 146467 3bfxA 296 29.57 c.37.1.5 155239 2qgsA 225 31.06 a.211.1.1 150782 3kzqA 208 34.01 2j2fA 363 35.34 1iirA 415 37.89 c.87.1.5 62453 1ztcA 221 40.22 d.157.1.11 125635 3h1dA 405 40.93 1wy0A 342 42.26 1v77A 212 43.26 c.6.3.2 108402 3ez0A 225 45.78 2zcoA 293 47.79 1ca1A 370 50.91 a.124.1.1,b.12.1.3 19340,23648 1wpaA 114 52.57 h.4.17.1 121145 1w63A 618 53.36 i.23.1.1 109192 3bptA 363 54.51 1fsgA 233 56.19 c.61.1.1 34029 2b3yA 888 56.31 c.8.2.1,c.83.1.1 127803,127804 1xawA 140 60.82 h.4.17.1 121831 2h9bA 312 64.44 1f5qB 252 64.61 a.74.1.1,a.74.1.1 18362,18363 1x19A 359 65.89 1jljA 189 67.39 c.57.1.1 63169 3goqA 310 68.17 1lj9A 144 70.70 a.4.5.28 78035 1itwA 741 70.95 c.77.1.2 76793 2f2hA 773 71.32 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1zp2A 235 72.61 3ct5A 159 73.09 1p2xA 159 73.32 a.40.1.1 104062 1ee4A 423 73.38 a.118.1.1 19128 3dy0A 336 76.32 3bsoA 510 77.73 2igpA 120 77.96 2f94F 350 78.60 1e8yA 966 79.72 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2v95A 371 79.75 2pkeA 251 84.10 1yxaA 398 84.11 2jgzB 260 84.88 3hd5A 195 84.93 2w5aA 279 85.48