# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 6.61e-23 3ddeA 239 1.75e-22 2rd3A 223 1.82e-22 3ibxA 221 2.08e-22 1yakA 263 2.65e-22 a.132.1.3 122833 3mvuA 226 4.68e-22 1tyhA 248 6.29e-22 a.132.1.3 107458 1rcwA 231 6.77e-22 a.132.1.4 97299 1uddA 226 8.15e-22 a.132.1.3 107776 1z72A 225 1.07e-21 a.132.1.3 124583 2a2mA 258 2.24e-21 a.132.1.3 126039 3hlxA 258 4.79e-21 1rtwA 220 7.62e-21 a.132.1.3 97823 1otvA 259 8.12e-21 a.132.1.4 93526 2qzcA 214 3.47e-20 2f2gA 221 3.91e-20 a.132.1.3 132816 3hmlA 258 2.29e-19 2q4xA 221 3.16e-18 a.132.1.3 139880 3hnhA 258 6.30e-18 3bjdA 332 6.19e-17 1wwmA 190 1.43e-12 a.132.1.3 121363 3b5oA 244 7.83e-11 1wzdA 215 1.17e-09 a.132.1.1 121493 1iw0A 215 2.12e-09 a.132.1.1 83720 3i9tA 263 2.29e-08 1n45A 233 3.52e-07 a.132.1.1 79981 1wovA 250 1.05e-06 a.132.1.1 121124 1sk7A 198 0.001256 a.132.1.2 105671 1j77A 209 0.004255 a.132.1.2 62674 2jcdA 345 0.08517 3chhA 336 0.1208 3ge3A 500 0.3157 1w68A 390 0.5699 a.25.1.2 109216 2itbA 206 1.015 a.25.1.7 147793 1kgnA 329 1.380 a.25.1.2 68584 3dhzA 329 1.406 a.25.1.2 157741 3ge3B 327 2.670 2incA 491 2.702 a.25.1.2 137524 3dhiB 327 2.799 1syyA 346 2.996 a.25.1.2 106126 2incB 322 3.894 a.25.1.2 137525 2inpA 494 4.155 1zvdA 380 5.401 1t0qB 330 6.016 a.25.1.2 106221 2oh3A 167 6.973 a.25.1.8 148774 1s6yA 450 8.715 c.2.1.5,d.162.1.2 105314,105315 3m66A 270 10.66 1za0A 275 10.67 a.25.1.2 124774 2fzfA 175 10.88 a.25.1.1 134437 2rccA 346 12.12 3ee4A 323 12.57 2d5rB 116 13.11 d.370.1.1 146467 1ca1A 370 14.05 a.124.1.1,b.12.1.3 19340,23648 1oq9A 363 14.28 a.25.1.2 87257 1otkA 249 18.37 a.25.1.2 93521 2inpC 328 19.45 3ez0A 225 19.49 2wm8A 187 21.28 1mxrA 375 24.58 a.25.1.2 85197 1w63A 618 25.11 i.23.1.1 109192 2uw1A 338 28.04 1jk0B 345 28.78 a.25.1.2 63143 2b3yA 888 31.50 c.8.2.1,c.83.1.1 127803,127804 2zcoA 293 33.82 2j2fA 363 34.47 3dlwA 411 34.74 3hd5A 195 35.80 2gfsA 372 36.59 d.144.1.7 135109 3kzqA 208 36.62 2qgsA 225 36.94 a.211.1.1 150782 1iirA 415 42.59 c.87.1.5 62453 1ztcA 221 42.67 d.157.1.11 125635 1mhyB 395 44.97 a.25.1.2 16781 1p2xA 159 45.67 a.40.1.1 104062 3bsoA 510 47.14 3ia7A 402 49.27 3h93A 192 49.81 3ct5A 159 52.34 2jgzB 260 52.49 1f5qB 252 52.74 a.74.1.1,a.74.1.1 18362,18363 3ei9A 432 53.55 3bptA 363 55.44 1wy0A 342 55.94 1wpaA 114 56.42 h.4.17.1 121145 1rrvA 416 56.53 c.87.1.5 105083 3h4tA 404 58.03 1lj9A 144 59.43 a.4.5.28 78035 2igpA 120 59.75 3hmuA 472 60.36 2sqcA 631 60.88 a.102.4.2,a.102.4.2 18854,18855 1c4zA 358 61.74 d.148.1.1 41766 1t0qA 498 62.05 a.25.1.2 106220 2i53A 258 63.22 a.74.1.1,a.74.1.1 147505,147506 1e8yA 966 63.33 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2csgA 424 65.89 b.82.2.12 130768 1bedA 181 66.87 c.47.1.13 90330 2go7A 207 71.98 c.108.1.6 135434 2in3A 216 73.54 2i6xA 211 74.45 1xawA 140 75.92 h.4.17.1 121831 1q15A 503 76.05 c.26.2.1,d.153.1.1 95538,95539 2v95A 371 78.59 1jljA 189 79.76 c.57.1.1 63169 3go9A 492 80.24 2qtqA 213 80.64 1ee4A 423 84.44 a.118.1.1 19128 1yfsA 465 85.64 a.203.1.1,d.104.1.1 123088,123089 2c4mA 796 86.05 1itwA 741 87.34 c.77.1.2 76793 1mtyB 384 87.44 a.25.1.2 16740 2vofA 157 87.50 1p0yA 444 89.25 a.166.1.1,b.85.7.3 87654,87655