# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 4.56e-22 3ddeA 239 9.74e-22 2rd3A 223 1.03e-21 1yakA 263 1.05e-21 a.132.1.3 122833 3ibxA 221 1.63e-21 3mvuA 226 2.54e-21 1tyhA 248 2.67e-21 a.132.1.3 107458 1rcwA 231 3.55e-21 a.132.1.4 97299 1uddA 226 4.21e-21 a.132.1.3 107776 1z72A 225 5.50e-21 a.132.1.3 124583 2a2mA 258 2.04e-20 a.132.1.3 126039 3hlxA 258 2.14e-20 1otvA 259 3.71e-20 a.132.1.4 93526 1rtwA 220 5.21e-20 a.132.1.3 97823 2qzcA 214 1.69e-19 2f2gA 221 2.16e-19 a.132.1.3 132816 3hmlA 258 1.02e-18 2q4xA 221 1.46e-17 a.132.1.3 139880 3hnhA 258 2.74e-17 3bjdA 332 1.65e-16 1wwmA 190 3.10e-12 a.132.1.3 121363 3b5oA 244 1.57e-10 1wzdA 215 2.39e-09 a.132.1.1 121493 1iw0A 215 5.07e-09 a.132.1.1 83720 3i9tA 263 3.65e-08 1n45A 233 4.63e-07 a.132.1.1 79981 1wovA 250 1.95e-06 a.132.1.1 121124 1sk7A 198 0.000886 a.132.1.2 105671 1j77A 209 0.006635 a.132.1.2 62674 2jcdA 345 0.1212 3chhA 336 0.1223 3ge3A 500 0.3855 1w68A 390 0.4614 a.25.1.2 109216 2itbA 206 1.156 a.25.1.7 147793 1kgnA 329 1.743 a.25.1.2 68584 3dhzA 329 1.860 a.25.1.2 157741 3dhiB 327 2.108 1syyA 346 2.277 a.25.1.2 106126 2incA 491 2.707 a.25.1.2 137524 2incB 322 2.894 a.25.1.2 137525 3ge3B 327 3.306 2inpA 494 4.455 2oh3A 167 5.421 a.25.1.8 148774 3ee4A 323 7.726 1t0qB 330 8.315 a.25.1.2 106221 1zvdA 380 9.304 1za0A 275 10.41 a.25.1.2 124774 2inpC 328 10.81 3m66A 270 11.11 3dlwA 411 13.94 2fzfA 175 17.34 a.25.1.1 134437 1s6yA 450 18.72 c.2.1.5,d.162.1.2 105314,105315 1ca1A 370 19.79 a.124.1.1,b.12.1.3 19340,23648 1w63A 618 20.11 i.23.1.1 109192 2rccA 346 20.29 1otkA 249 21.03 a.25.1.2 93521 1oq9A 363 22.55 a.25.1.2 87257 2zcoA 293 26.80 2wm8A 187 28.76 2d5rB 116 30.78 d.370.1.1 146467 2b3yA 888 31.93 c.8.2.1,c.83.1.1 127803,127804 3kzqA 208 33.35 3ct5A 159 34.22 1jk0B 345 34.86 a.25.1.2 63143 1ztcA 221 36.95 d.157.1.11 125635 3ez0A 225 38.16 2gfsA 372 38.32 d.144.1.7 135109 2uw1A 338 39.79 1ee4A 423 40.13 a.118.1.1 19128 1c4zA 358 40.77 d.148.1.1 41766 1wy0A 342 42.13 2pkeA 251 43.20 2v95A 371 43.67 1rrvA 416 45.10 c.87.1.5 105083 3dhiA 500 45.64 1mxrA 375 46.53 a.25.1.2 85197 2in3A 216 52.34 3hd5A 195 53.01 1wpaA 114 55.32 h.4.17.1 121145 1p2xA 159 57.00 a.40.1.1 104062 3cwwA 990 57.57 3h4tA 404 58.35 1t0qA 498 59.40 a.25.1.2 106220 1lj9A 144 62.48 a.4.5.28 78035 1iirA 415 62.84 c.87.1.5 62453 3bptA 363 64.04 1f5qB 252 64.07 a.74.1.1,a.74.1.1 18362,18363 1yxaA 398 65.27 3ei9A 432 67.41 3h93A 192 69.46 2qtqA 213 69.72 1xawA 140 69.78 h.4.17.1 121831 3dy0A 336 69.87 3h1dA 405 70.15 1bedA 181 70.17 c.47.1.13 90330 2qgsA 225 71.03 a.211.1.1 150782 2sqcA 631 71.19 a.102.4.2,a.102.4.2 18854,18855 3e4zA 990 72.21 1p0yA 444 73.70 a.166.1.1,b.85.7.3 87654,87655 1u09A 476 75.43 e.8.1.4 107545 2vdxA 373 77.82 2i6xA 211 80.18 3ia7A 402 85.60 1q15A 503 85.70 c.26.2.1,d.153.1.1 95538,95539 2j2fA 363 88.49