# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 9.22e-24 3mvuA 226 3.66e-23 2rd3A 223 3.67e-23 1yakA 263 3.68e-23 a.132.1.3 122833 3ibxA 221 3.83e-23 3ddeA 239 5.46e-23 1tyhA 248 5.71e-23 a.132.1.3 107458 1z72A 225 1.84e-22 a.132.1.3 124583 1uddA 226 1.87e-22 a.132.1.3 107776 1rcwA 231 2.38e-22 a.132.1.4 97299 3hlxA 258 1.65e-21 2a2mA 258 1.83e-21 a.132.1.3 126039 1rtwA 220 2.88e-21 a.132.1.3 97823 2f2gA 221 6.58e-21 a.132.1.3 132816 2qzcA 214 6.82e-21 1otvA 259 3.04e-20 a.132.1.4 93526 3hmlA 258 4.31e-19 2q4xA 221 2.10e-18 a.132.1.3 139880 3hnhA 258 6.25e-18 3bjdA 332 3.49e-17 3b5oA 244 2.92e-11 1wwmA 190 2.99e-11 a.132.1.3 121363 1wzdA 215 2.49e-10 a.132.1.1 121493 1iw0A 215 6.46e-10 a.132.1.1 83720 3i9tA 263 1.20e-09 1n45A 233 1.21e-08 a.132.1.1 79981 1wovA 250 1.90e-07 a.132.1.1 121124 1j77A 209 0.000640 a.132.1.2 62674 1sk7A 198 0.001540 a.132.1.2 105671 2jcdA 345 0.01028 3chhA 336 0.09673 3ee4A 323 0.1161 1w68A 390 0.2278 a.25.1.2 109216 2itbA 206 0.2921 a.25.1.7 147793 1syyA 346 0.3958 a.25.1.2 106126 2incB 322 1.281 a.25.1.2 137525 1jk0B 345 1.297 a.25.1.2 63143 1kgnA 329 4.230 a.25.1.2 68584 3dhzA 329 4.709 a.25.1.2 157741 2inpC 328 5.166 1f0kA 364 6.092 c.87.1.2 35465 1t0qB 330 6.447 a.25.1.2 106221 1otkA 249 6.685 a.25.1.2 93521 2uw1A 338 7.110 1kwmA 402 7.164 c.56.5.1,d.58.3.1 73079,73080 3ge3B 327 7.803 3ia7A 402 7.858 1jixA 351 8.325 c.87.1.1 63081 3g15A 401 8.335 2yu1A 451 10.68 2j2fA 363 11.58 1mhyB 395 14.18 a.25.1.2 16781 1za0A 275 17.07 a.25.1.2 124774 2vsnA 568 17.92 3ivmA 693 18.42 2d5rB 116 19.93 d.370.1.1 146467 3ez0A 225 24.36 1mxrA 375 25.35 a.25.1.2 85197 1iirA 415 28.48 c.87.1.5 62453 2bfwA 200 28.95 c.87.1.8 128456 2rccA 346 29.08 2w9zA 257 31.80 1mtyB 384 32.73 a.25.1.2 16740 2i53A 258 37.05 a.74.1.1,a.74.1.1 147505,147506 2f2cA 254 38.25 a.74.1.1,a.74.1.1 132805,132806 2nteA 210 46.33 1umdB 324 49.46 c.36.1.7,c.48.1.2 99600,99601 3kzqA 208 49.72 1vbjA 281 49.83 3h4tA 404 50.22 3dhiB 327 51.41 2sasA 185 51.62 a.39.1.5 17258 3iurA 693 51.85 2cqsA 842 52.63 3di5A 168 52.71 3iujA 693 53.35 1vk2A 204 53.80 c.18.1.2 100845 1yqdA 366 55.98 3fx6A 307 56.16 3ha4A 154 58.19 2bkhA 814 63.59 1h2wA 710 65.47 b.69.7.1,c.69.1.4 76596,76597 1x19A 359 65.85 2zcoA 293 69.74 3f7wA 288 69.94 1sw2A 275 70.79 c.94.1.1 106064 1khyA 148 71.09 a.174.1.1 77410 2wwuA 371 72.58 1o6cA 388 72.75 c.87.1.3 92565 3lgbA 194 73.11 2pq6A 482 73.12 c.87.1.10 149785 3d3yA 425 76.19 1iuqA 367 76.30 c.112.1.1 90703 3ge3A 500 80.83 3f7jA 276 82.88 3lmsA 309 83.33 2d3yA 219 83.63 2oc5A 244 84.27 a.25.1.6 148720 1ezfA 340 86.85 a.128.1.2 19440 1rrvA 416 88.50 c.87.1.5 105083 2gekA 406 89.94