# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 1.44e-25 2rd3A 223 2.29e-25 3ibxA 221 3.24e-25 1yakA 263 6.34e-25 a.132.1.3 122833 1tyhA 248 9.92e-25 a.132.1.3 107458 3ddeA 239 1.03e-24 3mvuA 226 1.17e-24 1rcwA 231 1.55e-24 a.132.1.4 97299 1z72A 225 2.27e-24 a.132.1.3 124583 1uddA 226 3.99e-24 a.132.1.3 107776 3hlxA 258 1.33e-23 2a2mA 258 1.91e-23 a.132.1.3 126039 1rtwA 220 2.08e-23 a.132.1.3 97823 1otvA 259 6.10e-23 a.132.1.4 93526 2qzcA 214 1.34e-22 2f2gA 221 2.32e-22 a.132.1.3 132816 3hmlA 258 4.15e-21 2q4xA 221 2.29e-20 a.132.1.3 139880 3hnhA 258 3.57e-20 3bjdA 332 4.19e-18 1wwmA 190 1.75e-13 a.132.1.3 121363 3b5oA 244 3.83e-12 1wzdA 215 1.07e-11 a.132.1.1 121493 1iw0A 215 2.90e-11 a.132.1.1 83720 3i9tA 263 4.68e-10 1n45A 233 9.25e-09 a.132.1.1 79981 1wovA 250 2.02e-07 a.132.1.1 121124 1j77A 209 0.000218 a.132.1.2 62674 1sk7A 198 0.000353 a.132.1.2 105671 2jcdA 345 0.01810 3chhA 336 0.05593 1w68A 390 0.08266 a.25.1.2 109216 2itbA 206 0.1468 a.25.1.7 147793 1jk0B 345 0.4856 a.25.1.2 63143 1syyA 346 0.5035 a.25.1.2 106126 3ee4A 323 0.6798 3dhzA 329 0.7001 a.25.1.2 157741 1kgnA 329 1.490 a.25.1.2 68584 2incB 322 3.880 a.25.1.2 137525 2oh3A 167 4.098 a.25.1.8 148774 3ge3B 327 5.500 1kwmA 402 5.765 c.56.5.1,d.58.3.1 73079,73080 3ia7A 402 7.230 1bedA 181 7.301 c.47.1.13 90330 1rrvA 416 8.800 c.87.1.5 105083 2vccA 891 8.990 2vsnA 568 9.543 1iirA 415 10.24 c.87.1.5 62453 2rccA 346 10.46 3m66A 270 10.66 2w9zA 257 12.34 3kzqA 208 12.42 3hd5A 195 12.89 2fzfA 175 13.36 a.25.1.1 134437 2i53A 258 15.62 a.74.1.1,a.74.1.1 147505,147506 2inpC 328 15.69 3ez0A 225 16.62 1u6zA 513 17.56 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2sqcA 631 19.37 a.102.4.2,a.102.4.2 18854,18855 1mxrA 375 19.56 a.25.1.2 85197 1ca1A 370 20.80 a.124.1.1,b.12.1.3 19340,23648 1fsgA 233 21.84 c.61.1.1 34029 3di5A 168 22.67 3ivmA 693 23.72 3h4tA 404 25.06 2d5rB 116 29.07 d.370.1.1 146467 2v95A 371 29.36 2qugA 394 29.98 1t0qB 330 30.09 a.25.1.2 106221 1jixA 351 30.87 c.87.1.1 63081 1x19A 359 32.08 3iujA 693 32.78 2f2cA 254 33.65 a.74.1.1,a.74.1.1 132805,132806 1yxaA 398 35.57 2cqsA 842 38.57 3iurA 693 38.93 2b82A 211 43.62 c.108.1.12 128057 1mhyB 395 44.04 a.25.1.2 16781 2pq6A 482 44.55 c.87.1.10 149785 1rl3A 288 45.07 b.82.3.2,b.82.3.2 104975,104976 3fx6A 307 46.24 2zcoA 293 47.87 1yuzA 202 49.02 a.25.1.1,g.41.5.1 124077,124078 1vk2A 204 49.11 c.18.1.2 100845 2vdxA 373 51.82 2uw1A 338 53.21 3dhiB 327 54.30 3h93A 192 59.04 1mtyB 384 59.37 a.25.1.2 16740 1zp2A 235 59.58 1fvkA 189 59.77 c.47.1.13 90351 1kuxA 207 63.66 d.108.1.1 73021 2inpA 494 64.49 1sbpA 310 66.92 c.94.1.1 35760 1nv8A 284 66.93 c.66.1.30 86224 2in3A 216 67.76 2ol2A 395 68.73 1zvdA 380 68.91 1z5rA 306 72.88 c.56.5.1 124488 2d3yA 219 72.92 3lgbA 194 74.44 1za0A 275 77.65 a.25.1.2 124774 3f7jA 276 79.05 1iuqA 367 79.65 c.112.1.1 90703 2x1nB 261 80.89 3gwzA 369 82.28 1vbjA 281 83.70 3l9vA 189 84.54 1yzxA 226 84.77 2wm8A 187 85.24 2nqrA 411 85.73 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 3gwfA 540 88.03 2qvsB 310 89.12