# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 9.18e-13 a.132.1.3 122833 2qcxA 263 1.40e-12 3ddeA 239 1.62e-12 2rd3A 223 2.16e-12 1tyhA 248 2.56e-12 a.132.1.3 107458 3ibxA 221 3.79e-12 3mvuA 226 4.95e-12 1uddA 226 5.79e-12 a.132.1.3 107776 3hlxA 258 9.59e-12 3hmlA 258 1.26e-11 1rcwA 231 1.86e-11 a.132.1.4 97299 1z72A 225 2.83e-11 a.132.1.3 124583 1rtwA 220 9.17e-11 a.132.1.3 97823 1otvA 259 1.18e-10 a.132.1.4 93526 2a2mA 258 1.43e-10 a.132.1.3 126039 2qzcA 214 1.70e-10 3hnhA 258 1.86e-09 2f2gA 221 5.28e-09 a.132.1.3 132816 2q4xA 221 2.45e-08 a.132.1.3 139880 3bjdA 332 1.45e-07 1wwmA 190 7.99e-06 a.132.1.3 121363 1wzdA 215 2.75e-05 a.132.1.1 121493 3b5oA 244 2.77e-05 1iw0A 215 5.55e-05 a.132.1.1 83720 3i9tA 263 0.000123 1n45A 233 0.000148 a.132.1.1 79981 1wovA 250 0.002794 a.132.1.1 121124 1syyA 346 0.08526 a.25.1.2 106126 1sk7A 198 0.1593 a.132.1.2 105671 1w68A 390 0.7923 a.25.1.2 109216 3dhzA 329 0.8368 a.25.1.2 157741 1kgnA 329 0.8881 a.25.1.2 68584 1j77A 209 1.267 a.132.1.2 62674 3n7qA 310 2.777 3ljvA 283 3.035 3ljxA 288 3.393 1khdA 345 3.778 a.46.2.1,c.27.1.1 77400,77401 2jcdA 345 3.882 3m66A 270 4.650 2tpt 440 5.623 2wk6A 482 7.830 2o70A 174 8.328 a.288.1.1 148645 1uouA 474 8.893 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2bpqA 373 9.715 1v4vA 376 10.25 c.87.1.3 100313 1ursA 402 10.94 c.94.1.1 99833 1yqyA 523 11.25 d.92.1.14,d.166.1.1 123903,123904 2b6cA 220 13.76 a.118.1.17 127983 1i84S 1184 13.96 i.15.1.1 61940 2incB 322 15.80 a.25.1.2 137525 1sxjC 340 15.86 a.80.1.1,c.37.1.20 106085,106086 1kpgA 287 17.81 c.66.1.18 68735 2j0fA 482 18.14 1sxjB 323 19.40 a.80.1.1,c.37.1.20 106083,106084 1giqA 413 19.49 d.166.1.1,d.166.1.1 76224,76225 2bkhA 814 19.60 1m7yA 435 19.89 c.67.1.4 78761 1zjcA 418 20.25 e.60.1.1 125147 3beoA 375 20.42 2i1qA 322 21.88 a.60.4.1,c.37.1.11 136984,136985 3draB 390 24.18 3e3vA 177 24.47 2elcA 329 24.88 a.46.2.1,c.27.1.1 146897,146898 3hmuA 472 24.89 3ge3A 500 25.67 2bbrA 195 25.68 3k01A 412 26.45 1o6cA 388 26.96 c.87.1.3 92565 3f4sA 226 27.86 2gmyA 153 28.24 a.152.1.3 135398 3cswA 285 29.20 1wqaA 455 29.44 1wrvA 308 30.28 1vbjA 281 30.61 1zklA 353 30.88 1t0qB 330 31.07 a.25.1.2 106221 1in6A 334 31.71 a.4.5.11,c.37.1.20 62601,62602 3broA 141 31.80 a.4.5.28 155517 3bvsA 239 31.92 1m5yA 408 31.99 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2eiyA 308 33.05 2inpC 328 33.28 3fiuA 249 33.54 3f7jA 276 33.66 3b9pA 297 34.61 3cq0A 339 34.67 2f7lA 455 35.53 3kndA 460 36.03 2cc0A 195 38.64 c.6.2.3 130209 1n4qB 377 38.80 a.102.4.3 91636 1tuoA 464 39.77 1bedA 181 40.05 c.47.1.13 90330 3f4tA 226 40.78 3ee4A 323 41.52 3jzmA 519 41.65 3hx4A 508 41.94 1rrvA 416 43.49 c.87.1.5 105083 2chgA 226 45.43 1u2kA 309 46.04 a.93.1.3 112983 3d78A 119 46.93 2eo5A 419 47.54 3ht5A 368 47.79 1ca1A 370 48.35 a.124.1.1,b.12.1.3 19340,23648 1brwA 433 48.44 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 3mykX 762 49.16 2ekcA 262 49.74 2remA 193 50.09 3i05A 395 51.21 1rd5A 262 51.34 c.1.2.4 111772 1a0gA 282 51.52 e.17.1.1 43276 1uf2A 1019 51.54 e.28.1.2 99289 3d5lA 221 53.50 3lqsA 280 53.66 1w3iA 293 54.64 c.1.10.1 109152 3f4rA 226 54.83 1y2kA 349 55.66 a.211.1.2 122571 1og6A 298 56.06 c.1.7.1 86984 1jetA 517 56.09 c.94.1.1 35718 1w9iA 770 56.37 2gxgA 146 56.51 1kfcA 268 57.80 c.1.2.4 77371 3hjeA 704 57.94 1mxrA 375 59.33 a.25.1.2 85197 3da1A 561 59.41 3lvyA 207 59.84 3jz6A 373 59.88 1aq0A 306 61.27 c.1.8.3 28842 1anf 370 61.39 3daaA 277 61.53 e.17.1.1 43272 1vquA 374 62.25 3bi8A 291 62.83 3dfgA 162 63.89 1anfA 370 64.13 c.94.1.1 35776 2yrrA 353 64.82 2i6lA 320 65.64 3gnlA 244 65.99 3hjzA 334 66.44 1vk2A 204 66.92 c.18.1.2 100845 2grmA 317 66.95 a.35.1.11,a.118.8.4 147161,147162 2v26A 784 67.47 2j5vA 367 67.93 3lc0A 456 68.98 3cjpA 272 69.17 2ag6A 314 69.61 2zxrA 666 69.88 1ockA 412 71.34 c.117.1.1 86802 3csvA 333 71.39 3h4tA 404 71.77 1mhyB 395 72.26 a.25.1.2 16781 3chhA 336 72.50 3dthA 372 72.74 1y42X 392 73.44 2v5jA 287 77.79 2f6sA 201 78.69 a.265.1.1 133058 1iirA 415 78.87 c.87.1.5 62453 1lfpA 249 79.16 e.39.1.1 73885 3i5tA 476 79.18 3jzjA 409 80.60 1pyfA 312 80.63 c.1.7.1 95334 2nooA 502 81.20 2r60A 499 81.67 3hriA 456 82.18 3deoA 183 82.24 b.34.13.2,k.37.1.1 157592,157593 3lgbA 194 83.95 3igxA 324 85.00 2o8iA 165 85.10 a.288.1.1 148676 1bw0A 416 85.50 c.67.1.1 34385 1khoA 370 86.26 a.124.1.1,b.12.1.3 72489,72490 1cliA 345 87.02 d.79.4.1,d.139.1.1 39816,41459 2yw3A 207 87.25 3h5qA 436 87.32 1lw7A 365 87.91 c.26.1.3,c.37.1.1 74295,74296 3c48A 438 89.15 3adoA 319 89.55 2dpoA 319 89.78