# List of top-scoring protein chains for T0627.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1to9A 260 7.18e-25 a.132.1.3 107172 1yakA 263 9.85e-25 a.132.1.3 122833 2qcxA 263 1.41e-24 1tyhA 248 3.82e-24 a.132.1.3 107458 3ibxA 221 9.02e-24 2rd3A 223 9.33e-24 3mvuA 226 1.05e-22 3hmlA 258 1.19e-22 3hlxA 258 1.42e-22 1otwA 255 1.85e-22 a.132.1.4 93528 1otvA 259 1.94e-22 a.132.1.4 93526 3hnhA 258 1.51e-21 1uddA 226 2.44e-21 a.132.1.3 107776 2gm8A 221 4.36e-21 a.132.1.3 135368 1rcwA 231 9.84e-20 a.132.1.4 97299 1rtwA 220 1.02e-19 a.132.1.3 97823 2a6bA 234 6.68e-19 a.132.1.3 126235 1z72A 225 1.09e-18 a.132.1.3 124583 3ddeA 239 7.55e-17 2qzcA 214 3.47e-16 2q4xA 221 7.99e-16 a.132.1.3 139880 3bjdA 332 2.54e-10 2a2mA 258 8.59e-10 a.132.1.3 126039 1j02A 267 0.000251 a.132.1.1 90732 3i9tA 263 0.000251 1xk3A 233 0.000307 a.132.1.1 115400 1ozlA 233 0.000354 a.132.1.1 93848 1xk0A 233 0.000357 a.132.1.1 122051 1n45A 233 0.000381 a.132.1.1 79981 1ni6A 224 0.000422 a.132.1.1 85734 3b5oA 244 0.000439 1xjzA 233 0.000442 a.132.1.1 122049 1xk1A 233 0.000554 a.132.1.1 122053 1dvgA 267 0.001684 a.132.1.1 19510 1wzdA 215 0.002947 a.132.1.1 121493 1wnwA 215 0.003178 a.132.1.1 114765 1wnxA 215 0.003603 a.132.1.1 114768 1wnvA 215 0.003692 a.132.1.1 114762 1wwmA 190 0.005522 a.132.1.3 121363 1syyA 346 0.02815 a.25.1.2 106126 2aniA 346 0.02955 1we1A 240 0.04253 a.132.1.1 114542 2q32A 264 0.07600 1j30A 144 12.77 a.25.1.1 90806 1rxwA 336 13.46 a.60.7.1,c.120.1.2 98059,98060 3hy0A 441 13.60 3hxwA 441 17.04 3lyfA 245 18.79 2uw1A 338 19.86 1f6wA 533 22.29 c.69.1.1 34629 1wovA 250 24.68 a.132.1.1 121124 2va1A 256 30.07 3ez0A 225 31.56 1iq0A 592 33.57 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 2hszA 243 34.63 c.108.1.6 136726 2ri2A 319 34.83 2rhzA 319 36.03 2on5A 206 37.17 2rhyA 319 39.55 2ri3A 319 39.94 2ri5A 319 40.18 2rhuA 329 41.42 1ou5A 448 42.90 a.173.1.1,d.218.1.4 87445,87446 2j0pA 345 43.65 e.62.1.1 137903 3a4xA 311 45.93 1rz4A 226 46.36 a.4.5.53,a.118.1.18 105131,105132 2pcqA 283 47.94 2o3kA 161 53.74 2jjxA 255 53.96 1ug6A 431 55.89 c.1.8.4 88490 1vepA 516 57.60 b.3.1.1,c.1.8.1 120027,120028 2rhiA 345 57.80 1venA 516 57.95 b.3.1.1,c.1.8.1 120023,120024 1ufrA 181 58.79 c.61.1.1 99354 3jzyA 510 61.01 2g47A 990 61.45 1jmyA 522 61.67 c.69.1.1 63182 2jg4A 990 61.82 1nq2A 264 62.68 a.123.1.1 86007 2j0rA 345 63.04 e.62.1.1 137912 2v9zA 304 63.56 1oz2A 331 64.34 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2rjdA 331 64.65 2pqwA 323 64.81 2gwdA 449 67.77 3mmzA 176 68.55 2wjwA 388 70.46 2nynA 565 76.14 2ev1A 222 77.99 2uw1B 338 78.28 2bceA 579 78.74 c.69.1.1 34625 1nq0A 263 79.60 a.123.1.1 86005 1eiaA 207 81.92 a.28.3.1,a.73.1.1 16951,18331 2eiaA 206 82.61 a.28.3.1,a.73.1.1 16949,18329 2i53A 258 83.99 a.74.1.1,a.74.1.1 147505,147506 2jm1A 141 84.89 1sofA 156 85.25 a.25.1.1 118973 1x6oA 174 86.35 b.34.5.2,b.40.4.5 109493,109494 3czoA 539 86.46 1q4xA 253 88.98 a.123.1.1 95833 1naxA 252 89.04 a.123.1.1 85501 2kdvA 164 89.18 2fkzA 155 89.22 a.25.1.1 133688 2j4aA 253 89.28 1i9sA 210 89.57 c.45.1.1 62099 1n46A 258 89.82 a.123.1.1 85315