# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 3.43e-19 a.132.1.3 122833 3hlxA 258 5.15e-19 2qcxA 263 6.57e-19 3ibxA 221 1.03e-18 1z72A 225 1.03e-18 a.132.1.3 124583 2rd3A 223 1.03e-18 3ddeA 239 1.13e-18 3mvuA 226 1.73e-18 1otvA 259 3.79e-18 a.132.1.4 93526 3hnhA 258 4.75e-18 1rcwA 231 7.90e-18 a.132.1.4 97299 3hmlA 258 9.23e-18 2a2mA 258 9.75e-18 a.132.1.3 126039 1uddA 226 9.93e-18 a.132.1.3 107776 2q4xA 221 1.09e-17 a.132.1.3 139880 1tyhA 248 1.21e-17 a.132.1.3 107458 2qzcA 214 1.71e-17 2f2gA 221 2.29e-17 a.132.1.3 132816 1rtwA 220 6.05e-17 a.132.1.3 97823 3bjdA 332 2.57e-14 1wwmA 190 1.43e-13 a.132.1.3 121363 3b5oA 244 8.04e-09 1wzdA 215 2.38e-07 a.132.1.1 121493 3i9tA 263 5.03e-07 1xjzA 233 7.02e-07 a.132.1.1 122049 1n45A 233 3.77e-05 a.132.1.1 79981 1iw0A 215 4.70e-05 a.132.1.1 83720 1wovA 250 0.000693 a.132.1.1 121124 1sk7A 198 0.008038 a.132.1.2 105671 1j77A 209 0.01623 a.132.1.2 62674 2jcdA 345 0.03824 3chhA 336 0.1528 2incA 491 0.3268 a.25.1.2 137524 3ge3A 500 0.3514 1t0qA 498 0.7223 a.25.1.2 106220 1mhyD 521 1.481 a.25.1.2 16780 2inpC 328 1.830 3ge3B 327 2.126 2incB 322 2.373 a.25.1.2 137525 3dhiB 327 2.830 1t0qB 330 3.006 a.25.1.2 106221 1otkA 249 4.835 a.25.1.2 93521 2inpA 494 5.039 1xsm 390 5.518 3ez0A 225 5.676 1kgnA 329 6.470 a.25.1.2 68584 2itbA 206 7.303 a.25.1.7 147793 3f4tA 226 8.928 1syyA 346 9.387 a.25.1.2 106126 1mtyD 512 10.17 a.25.1.2 16742 1r2fA 319 11.34 a.25.1.2 16800 3f4sA 226 13.41 1mtyB 384 15.49 a.25.1.2 16740 1r5jA 337 15.89 c.77.1.5 97097 2oh3A 167 17.16 a.25.1.8 148774 3dhzA 329 17.69 a.25.1.2 157741 1iirA 415 17.86 c.87.1.5 62453 3dhiA 500 19.19 1zc6A 305 20.72 c.55.1.5,c.55.1.5 124888,124889 3ee4A 323 22.10 1bedA 181 25.50 c.47.1.13 90330 2fzfA 175 27.33 a.25.1.1 134437 3f4rA 226 28.23 1w68A 390 32.41 a.25.1.2 109216 1mhyB 395 32.49 a.25.1.2 16781 1fvkA 189 32.70 c.47.1.13 90351 2d5rB 116 33.15 d.370.1.1 146467 1f5qB 252 38.02 a.74.1.1,a.74.1.1 18362,18363 2je8A 848 39.11 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 2rccA 346 39.80 3dthA 372 40.85 1acvA 189 42.71 c.47.1.13 90328 2sasA 185 43.59 a.39.1.5 17258 3deuA 166 44.18 a.4.5.28 157600 1lc5A 364 46.07 c.67.1.1 73827 2in3A 216 49.68 1vchA 175 50.77 c.61.1.1 119980 1vz0A 230 51.32 a.4.14.1,d.268.1.1 108929,108930 2ouwA 138 52.26 a.152.1.4 149029 3kjrA 511 52.88 1vi0A 206 53.39 a.4.1.9,a.121.1.1 100720,100721 1u7pA 164 54.39 c.108.1.17 113095 3fm5A 150 54.82 3cihA 739 55.30 2b3yA 888 55.50 c.8.2.1,c.83.1.1 127803,127804 1unlD 208 56.74 a.74.1.1 113326 2xdnA 210 57.00 1s50A 259 57.21 c.94.1.1 118864 2zcoA 293 59.29 2qf9A 179 61.21 2o2cA 613 62.35 2ct9A 208 64.76 3dssB 331 65.60 a.102.4.3 157841 1f4qA 165 66.47 a.39.1.8 17360 2j2fA 363 67.31 3bt5A 177 67.47 1r4wA 226 68.82 c.47.1.13 97050 1vqrA 297 70.60 a.211.1.3 114015 1cliA 345 71.67 d.79.4.1,d.139.1.1 39816,41459 2cy8A 453 72.50 1w98B 283 73.35 a.74.1.1,a.74.1.1 144548,144549 1pb6A 212 74.93 a.4.1.9,a.121.1.1 88017,88018 2jjzB 150 76.66 1wpaA 114 77.24 h.4.17.1 121145 3n7qA 310 77.88 1qgjA 300 78.40 a.93.1.1 18691 1zvdA 380 78.62 3gl5A 239 79.74 3bfxA 296 80.05 c.37.1.5 155239 2remA 193 80.17 3lhqA 220 80.24 1zlqA 502 81.47 c.94.1.1 125253 1qq7A 253 82.54 c.108.1.1 43329 3g1lA 256 82.82 2wb9A 211 88.38 3lqsA 280 88.67 3g33B 306 89.57 2af4C 333 89.78 c.77.1.5 126656