# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 7.10e-23 a.132.1.3 122833 2qcxA 263 1.64e-22 2rd3A 223 1.95e-22 3hlxA 258 2.27e-22 3ibxA 221 3.00e-22 1z72A 225 3.32e-22 a.132.1.3 124583 3ddeA 239 4.33e-22 3mvuA 226 6.91e-22 1otvA 259 2.31e-21 a.132.1.4 93526 3hnhA 258 2.44e-21 2q4xA 221 3.05e-21 a.132.1.3 139880 1rcwA 231 3.85e-21 a.132.1.4 97299 2a2mA 258 4.32e-21 a.132.1.3 126039 3hmlA 258 4.41e-21 1tyhA 248 5.98e-21 a.132.1.3 107458 1uddA 226 7.60e-21 a.132.1.3 107776 2qzcA 214 8.85e-21 2f2gA 221 1.07e-20 a.132.1.3 132816 1rtwA 220 3.42e-20 a.132.1.3 97823 3bjdA 332 7.26e-17 1wwmA 190 8.56e-16 a.132.1.3 121363 3b5oA 244 3.14e-10 1wzdA 215 1.53e-08 a.132.1.1 121493 1xjzA 233 3.87e-08 a.132.1.1 122049 3i9tA 263 7.68e-08 1iw0A 215 1.09e-05 a.132.1.1 83720 1n45A 233 1.35e-05 a.132.1.1 79981 1wovA 250 0.000324 a.132.1.1 121124 1sk7A 198 0.002661 a.132.1.2 105671 1j77A 209 0.005629 a.132.1.2 62674 2jcdA 345 0.01042 3ge3A 500 0.06354 3chhA 336 0.08362 1t0qA 498 0.1926 a.25.1.2 106220 2incA 491 0.2266 a.25.1.2 137524 2inpC 328 0.4717 1mhyD 521 0.4818 a.25.1.2 16780 3ge3B 327 0.5120 3dhiB 327 0.6441 2incB 322 0.9624 a.25.1.2 137525 1t0qB 330 1.042 a.25.1.2 106221 3ez0A 225 3.101 1xsm 390 3.123 1kgnA 329 3.749 a.25.1.2 68584 1otkA 249 3.789 a.25.1.2 93521 2inpA 494 4.484 1mtyD 512 4.885 a.25.1.2 16742 3dhiA 500 5.381 1r2fA 319 5.409 a.25.1.2 16800 2itbA 206 7.691 a.25.1.7 147793 1r5jA 337 7.717 c.77.1.5 97097 3f4tA 226 7.801 3dhzA 329 7.982 a.25.1.2 157741 1iirA 415 12.27 c.87.1.5 62453 1w68A 390 12.92 a.25.1.2 109216 3f4sA 226 13.55 2oh3A 167 16.88 a.25.1.8 148774 1syyA 346 17.60 a.25.1.2 106126 1bedA 181 18.23 c.47.1.13 90330 2rccA 346 19.31 1f5qB 252 20.65 a.74.1.1,a.74.1.1 18362,18363 2d5rB 116 22.11 d.370.1.1 146467 1zc6A 305 22.48 c.55.1.5,c.55.1.5 124888,124889 2j2fA 363 23.54 2fzfA 175 23.70 a.25.1.1 134437 3cihA 739 23.72 1qq7A 253 25.51 c.108.1.1 43329 3f4rA 226 25.70 1ffyA 917 28.78 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1mtyB 384 31.73 a.25.1.2 16740 1fvkA 189 32.06 c.47.1.13 90351 1mhyB 395 32.92 a.25.1.2 16781 1vi0A 206 35.80 a.4.1.9,a.121.1.1 100720,100721 1acvA 189 36.07 c.47.1.13 90328 1jz8A 1023 36.23 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2zcoA 293 37.26 1u7pA 164 37.41 c.108.1.17 113095 2je8A 848 38.41 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 2i53A 258 40.01 a.74.1.1,a.74.1.1 147505,147506 2o36A 674 41.34 2wb9A 211 41.49 2remA 193 42.30 3deuA 166 42.76 a.4.5.28 157600 2jjzB 150 43.07 3kjrA 511 43.70 3dthA 372 44.55 2b3yA 888 47.48 c.8.2.1,c.83.1.1 127803,127804 2ouwA 138 49.76 a.152.1.4 149029 1vqrA 297 50.45 a.211.1.3 114015 3htzA 464 50.76 2ct9A 208 51.38 2in3A 216 52.62 3ee4A 323 53.93 1w98B 283 54.64 a.74.1.1,a.74.1.1 144548,144549 3hy0A 441 54.82 1qgjA 300 55.40 a.93.1.1 18691 3bfxA 296 58.65 c.37.1.5 155239 2sasA 185 60.08 a.39.1.5 17258 3bt5A 177 60.20 1vchA 175 64.62 c.61.1.1 119980 2wxfA 940 65.64 1unlD 208 66.00 a.74.1.1 113326 3ku2A 507 67.13 1wpaA 114 67.22 h.4.17.1 121145 3lqsA 280 67.37 1qq5A 253 68.31 c.108.1.1 43327 3dssB 331 69.39 a.102.4.3 157841 2ac2A 309 69.93 2xdnA 210 70.47 1mxgA 435 70.80 b.71.1.1,c.1.8.1 85193,85194 3fm5A 150 70.81 3gmfA 205 71.85 2fa5A 162 72.67 1smlA 269 73.56 d.157.1.1 42053 1lc5A 364 74.62 c.67.1.1 73827 1cliA 345 77.29 d.79.4.1,d.139.1.1 39816,41459 3n7qA 310 77.60 1s50A 259 78.62 c.94.1.1 118864 2o2cA 613 78.82 1r9oA 477 80.08 a.104.1.1 104878 2oauA 306 81.63 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 2dvtA 327 83.74 c.1.9.15 131793 1zklA 353 84.17 1r4wA 226 84.95 c.47.1.13 97050 1epaA 164 86.95 b.60.1.1 27128 1zvdA 380 87.34