# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qcxA 263 2.73e-17 1yakA 263 2.75e-17 a.132.1.3 122833 3ibxA 221 2.84e-17 2rd3A 223 3.28e-17 1z72A 225 4.45e-17 a.132.1.3 124583 3mvuA 226 6.86e-17 3hlxA 258 6.90e-17 3ddeA 239 7.37e-17 1otvA 259 1.50e-16 a.132.1.4 93526 2q4xA 221 2.48e-16 a.132.1.3 139880 3hnhA 258 2.55e-16 2a2mA 258 3.33e-16 a.132.1.3 126039 1rcwA 231 3.58e-16 a.132.1.4 97299 3hmlA 258 4.77e-16 2f2gA 221 4.89e-16 a.132.1.3 132816 1uddA 226 4.89e-16 a.132.1.3 107776 2qzcA 214 6.48e-16 1tyhA 248 6.92e-16 a.132.1.3 107458 1rtwA 220 1.80e-15 a.132.1.3 97823 3bjdA 332 1.95e-12 1wwmA 190 4.47e-12 a.132.1.3 121363 3b5oA 244 5.36e-08 1wzdA 215 3.52e-07 a.132.1.1 121493 3i9tA 263 1.78e-06 1xjzA 233 1.82e-06 a.132.1.1 122049 1iw0A 215 6.65e-05 a.132.1.1 83720 1n45A 233 0.000166 a.132.1.1 79981 1wovA 250 0.001955 a.132.1.1 121124 1sk7A 198 0.03460 a.132.1.2 105671 1j77A 209 0.08013 a.132.1.2 62674 2jcdA 345 0.1297 3chhA 336 0.7324 2incA 491 1.145 a.25.1.2 137524 3ge3A 500 1.155 1t0qA 498 1.629 a.25.1.2 106220 3dhiB 327 2.377 1mhyD 521 2.679 a.25.1.2 16780 3ez0A 225 2.736 3ge3B 327 2.779 2inpC 328 2.977 1t0qB 330 3.572 a.25.1.2 106221 1kgnA 329 6.474 a.25.1.2 68584 2incB 322 7.516 a.25.1.2 137525 1xsm 390 9.398 3f4tA 226 9.471 1r2fA 319 12.12 a.25.1.2 16800 3f4sA 226 15.12 1f5qB 252 16.15 a.74.1.1,a.74.1.1 18362,18363 1otkA 249 16.19 a.25.1.2 93521 2d5rB 116 16.70 d.370.1.1 146467 1bedA 181 16.91 c.47.1.13 90330 1mtyD 512 17.02 a.25.1.2 16742 2inpA 494 17.81 2j2fA 363 21.97 1mtyB 384 22.93 a.25.1.2 16740 1fvkA 189 23.15 c.47.1.13 90351 1r5jA 337 24.03 c.77.1.5 97097 3hy0A 441 24.69 1qgjA 300 24.87 a.93.1.1 18691 3dhzA 329 26.50 a.25.1.2 157741 3f4rA 226 27.66 1acvA 189 27.94 c.47.1.13 90328 2remA 193 28.29 1w68A 390 28.44 a.25.1.2 109216 1syyA 346 29.80 a.25.1.2 106126 3dthA 372 32.93 1iirA 415 35.13 c.87.1.5 62453 1zc6A 305 37.51 c.55.1.5,c.55.1.5 124888,124889 1qq7A 253 38.05 c.108.1.1 43329 3h2zA 382 39.37 3dhiA 500 41.34 1u7pA 164 42.14 c.108.1.17 113095 3n7qA 310 44.27 3htzA 464 44.93 2in3A 216 45.44 3hd5A 195 47.67 1mhyB 395 51.53 a.25.1.2 16781 2o2cA 613 51.58 2itbA 206 51.81 a.25.1.7 147793 3lqsA 280 52.66 2qgsA 225 53.68 a.211.1.1 150782 1s50A 259 56.29 c.94.1.1 118864 3gt5A 402 56.70 1pa2A 306 56.82 a.93.1.1 18693 2o36A 674 58.17 2f2cA 254 58.64 a.74.1.1,a.74.1.1 132805,132806 2zcoA 293 58.74 1jz8A 1023 61.25 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 3h93A 192 62.28 3gmfA 205 64.59 3ee4A 323 65.47 1u3aA 189 67.28 c.47.1.13 119504 2i53A 258 67.45 a.74.1.1,a.74.1.1 147505,147506 1mxgA 435 68.40 b.71.1.1,c.1.8.1 85193,85194 1up7A 417 69.07 c.2.1.5,d.162.1.2 113374,113375 3fm5A 150 69.83 3g33B 306 71.04 1cipA 353 72.89 a.66.1.1,c.37.1.8 18210,32093 1cliA 345 72.96 d.79.4.1,d.139.1.1 39816,41459 1usgA 346 73.57 c.93.1.1 99864 1ztcA 221 75.09 d.157.1.11 125635 3bfxA 296 75.12 c.37.1.5 155239 1ffyA 917 76.51 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 3deuA 166 77.24 a.4.5.28 157600 2o2xA 218 78.03 c.108.1.19 148564 3lgbA 194 78.25 1smlA 269 79.11 d.157.1.1 42053 2je8A 848 79.74 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1lc5A 364 80.24 c.67.1.1 73827 3k21A 191 81.69 2ct9A 208 83.06 1xfxO 149 83.69 a.39.1.5 121955 1adrA 76 83.90 a.35.1.2 17042 3ku2A 507 85.70 2sasA 185 86.96 a.39.1.5 17258 2odaA 196 87.33 1r4wA 226 87.89 c.47.1.13 97050 2b3yA 888 88.84 c.8.2.1,c.83.1.1 127803,127804 2ouwA 138 89.13 a.152.1.4 149029 1qq5A 253 89.48 c.108.1.1 43327