# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rd3A 223 4.84e-14 3hlxA 258 5.28e-14 3ibxA 221 5.40e-14 2qcxA 263 5.56e-14 3ddeA 239 5.62e-14 1yakA 263 6.36e-14 a.132.1.3 122833 3mvuA 226 9.07e-14 1z72A 225 9.54e-14 a.132.1.3 124583 3hnhA 258 2.40e-13 1rcwA 231 2.68e-13 a.132.1.4 97299 1uddA 226 2.78e-13 a.132.1.3 107776 1otvA 259 2.93e-13 a.132.1.4 93526 1tyhA 248 3.07e-13 a.132.1.3 107458 2qzcA 214 3.32e-13 2q4xA 221 3.46e-13 a.132.1.3 139880 3hmlA 258 3.82e-13 2a2mA 258 6.31e-13 a.132.1.3 126039 2f2gA 221 8.31e-13 a.132.1.3 132816 1rtwA 220 2.40e-12 a.132.1.3 97823 3bjdA 332 7.61e-11 1wwmA 190 6.21e-10 a.132.1.3 121363 3b5oA 244 8.51e-07 1wzdA 215 1.12e-05 a.132.1.1 121493 1xjzA 233 4.46e-05 a.132.1.1 122049 3i9tA 263 4.83e-05 1iw0A 215 0.000966 a.132.1.1 83720 1n45A 233 0.002508 a.132.1.1 79981 1wovA 250 0.02443 a.132.1.1 121124 1j77A 209 0.1014 a.132.1.2 62674 1sk7A 198 0.1048 a.132.1.2 105671 3chhA 336 0.3928 2jcdA 345 0.5542 3ge3A 500 2.527 2incA 491 2.721 a.25.1.2 137524 2incB 322 3.876 a.25.1.2 137525 1otkA 249 5.406 a.25.1.2 93521 1t0qA 498 6.364 a.25.1.2 106220 3ge3B 327 7.367 2inpC 328 8.632 3ez0A 225 8.777 3dhiB 327 8.822 1mhyD 521 9.133 a.25.1.2 16780 1kgnA 329 9.554 a.25.1.2 68584 1r2fA 319 12.73 a.25.1.2 16800 2inpA 494 13.22 1t0qB 330 13.75 a.25.1.2 106221 2itbA 206 19.61 a.25.1.7 147793 2fzfA 175 22.17 a.25.1.1 134437 2j2fA 363 22.37 1xsm 390 23.99 1zc6A 305 27.17 c.55.1.5,c.55.1.5 124888,124889 3f4tA 226 27.24 1iirA 415 33.73 c.87.1.5 62453 3f4sA 226 34.36 2oh3A 167 39.75 a.25.1.8 148774 1vz0A 230 40.74 a.4.14.1,d.268.1.1 108929,108930 1r5jA 337 45.44 c.77.1.5 97097 3dhzA 329 46.00 a.25.1.2 157741 2ct9A 208 50.89 2d5rB 116 52.40 d.370.1.1 146467 3ee4A 323 55.08 2in3A 216 56.26 1mtyB 384 56.58 a.25.1.2 16740 3f4rA 226 57.32 1mtyD 512 58.06 a.25.1.2 16742 3bfxA 296 61.45 c.37.1.5 155239 2o2cA 613 61.88 2sasA 185 65.19 a.39.1.5 17258 3dhiA 500 66.01 1fvkA 189 66.31 c.47.1.13 90351 1acvA 189 67.71 c.47.1.13 90328 1bedA 181 68.02 c.47.1.13 90330 1wpaA 114 69.25 h.4.17.1 121145 2id3A 225 70.31 a.4.1.9,a.121.1.1 137261,137262 1w68A 390 71.31 a.25.1.2 109216 1r4wA 226 73.24 c.47.1.13 97050 3dssB 331 73.91 a.102.4.3 157841 1u7pA 164 78.32 c.108.1.17 113095 1vchA 175 79.48 c.61.1.1 119980 1te2A 226 81.50 c.108.1.6 106792 1vi0A 206 83.70 a.4.1.9,a.121.1.1 100720,100721 3dnfA 297 84.63 2zcoA 293 86.06 2jjzB 150 89.18 1qgjA 300 89.27 a.93.1.1 18691 1xawA 140 89.53 h.4.17.1 121831 1pa2A 306 89.85 a.93.1.1 18693