# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3ibxA	221	2.57e-14		
3hlxA	258	2.74e-14		
2rd3A	223	2.80e-14		
2qcxA	263	2.84e-14		
3ddeA	239	3.03e-14		
1yakA	263	3.26e-14	a.132.1.3	122833
3mvuA	226	4.40e-14		
1z72A	225	5.00e-14	a.132.1.3	124583
3hnhA	258	1.33e-13		
1rcwA	231	1.52e-13	a.132.1.4	97299
1otvA	259	1.68e-13	a.132.1.4	93526
1uddA	226	1.76e-13	a.132.1.3	107776
2qzcA	214	1.99e-13		
1tyhA	248	2.10e-13	a.132.1.3	107458
2q4xA	221	2.15e-13	a.132.1.3	139880
3hmlA	258	2.47e-13		
2a2mA	258	3.42e-13	a.132.1.3	126039
2f2gA	221	5.07e-13	a.132.1.3	132816
1rtwA	220	1.65e-12	a.132.1.3	97823
3bjdA	332	5.26e-11		
1wwmA	190	4.05e-10	a.132.1.3	121363
3b5oA	244	6.35e-07		
1wzdA	215	7.85e-06	a.132.1.1	121493
3i9tA	263	3.30e-05		
1xjzA	233	3.31e-05	a.132.1.1	122049
1iw0A	215	0.000675	a.132.1.1	83720
1n45A	233	0.001863	a.132.1.1	79981
1wovA	250	0.01819	a.132.1.1	121124
1j77A	209	0.08561	a.132.1.2	62674
1sk7A	198	0.09062	a.132.1.2	105671
3chhA	336	0.3117		
2jcdA	345	0.3946		
2incA	491	2.203	a.25.1.2	137524
3ge3A	500	2.441		
2incB	322	3.076	a.25.1.2	137525
1t0qA	498	4.321	a.25.1.2	106220
1otkA	249	4.459	a.25.1.2	93521
2inpC	328	5.065		
3ge3B	327	6.062		
1mhyD	521	7.262	a.25.1.2	16780
3dhiB	327	7.288		
3ez0A	225	7.903		
1kgnA	329	10.62	a.25.1.2	68584
2inpA	494	11.71		
1t0qB	330	11.77	a.25.1.2	106221
1r2fA	319	13.05	a.25.1.2	16800
1xsm	390	15.76		
2j2fA	363	20.55		
1zc6A	305	23.01	c.55.1.5,c.55.1.5	124888,124889
2fzfA	175	25.90	a.25.1.1	134437
2itbA	206	26.03	a.25.1.7	147793
1iirA	415	27.98	c.87.1.5	62453
3f4tA	226	34.30		
3f4sA	226	40.95		
3ee4A	323	41.41		
3bfxA	296	41.77	c.37.1.5	155239
1mtyB	384	44.52	a.25.1.2	16740
3dhzA	329	45.91	a.25.1.2	157741
1r5jA	337	46.64	c.77.1.5	97097
1w68A	390	47.53	a.25.1.2	109216
1mtyD	512	49.06	a.25.1.2	16742
2oh3A	167	50.98	a.25.1.8	148774
2d5rB	116	50.99	d.370.1.1	146467
1vz0A	230	56.26	a.4.14.1,d.268.1.1	108929,108930
3f4rA	226	56.44		
2id3A	225	57.35	a.4.1.9,a.121.1.1	137261,137262
3dhiA	500	60.31		
2o2cA	613	62.13		
2sasA	185	64.58	a.39.1.5	17258
2ct9A	208	64.73		
1acvA	189	64.83	c.47.1.13	90328
2in3A	216	64.93		
1bedA	181	65.19	c.47.1.13	90330
1fvkA	189	66.64	c.47.1.13	90351
1vi0A	206	71.60	a.4.1.9,a.121.1.1	100720,100721
1r4wA	226	74.43	c.47.1.13	97050
1vqrA	297	78.13	a.211.1.3	114015
3kjrA	511	80.31		
2je8A	848	81.30	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	147998,147999,148000,148001,148002
2zcoA	293	84.11		
2jjzB	150	86.10		
1u7pA	164	86.72	c.108.1.17	113095