# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rd3A 223 1.27e-14 3hlxA 258 1.45e-14 3ibxA 221 1.48e-14 2qcxA 263 1.53e-14 3ddeA 239 1.59e-14 1yakA 263 1.65e-14 a.132.1.3 122833 1z72A 225 2.61e-14 a.132.1.3 124583 3mvuA 226 2.69e-14 3hnhA 258 7.85e-14 1otvA 259 8.11e-14 a.132.1.4 93526 1rcwA 231 8.30e-14 a.132.1.4 97299 1uddA 226 8.33e-14 a.132.1.3 107776 1tyhA 248 9.84e-14 a.132.1.3 107458 2q4xA 221 1.01e-13 a.132.1.3 139880 2qzcA 214 1.14e-13 3hmlA 258 1.53e-13 2a2mA 258 2.04e-13 a.132.1.3 126039 2f2gA 221 2.63e-13 a.132.1.3 132816 1rtwA 220 8.63e-13 a.132.1.3 97823 3bjdA 332 2.85e-11 1wwmA 190 2.30e-10 a.132.1.3 121363 3b5oA 244 5.35e-07 1wzdA 215 6.69e-06 a.132.1.1 121493 1xjzA 233 2.80e-05 a.132.1.1 122049 3i9tA 263 2.99e-05 1iw0A 215 0.000663 a.132.1.1 83720 1n45A 233 0.001688 a.132.1.1 79981 1wovA 250 0.02164 a.132.1.1 121124 1sk7A 198 0.07569 a.132.1.2 105671 1j77A 209 0.08877 a.132.1.2 62674 3chhA 336 0.3156 2jcdA 345 0.3651 2incA 491 2.094 a.25.1.2 137524 3ge3A 500 2.112 2incB 322 3.251 a.25.1.2 137525 1otkA 249 3.759 a.25.1.2 93521 1t0qA 498 5.005 a.25.1.2 106220 3ge3B 327 5.265 2inpC 328 5.730 3dhiB 327 6.371 3ez0A 225 8.671 1mhyD 521 9.139 a.25.1.2 16780 1kgnA 329 10.16 a.25.1.2 68584 1t0qB 330 11.50 a.25.1.2 106221 2inpA 494 13.32 1r2fA 319 17.62 a.25.1.2 16800 1iirA 415 19.50 c.87.1.5 62453 1xsm 390 19.72 2j2fA 363 21.43 2fzfA 175 21.86 a.25.1.1 134437 2itbA 206 23.82 a.25.1.7 147793 1zc6A 305 29.50 c.55.1.5,c.55.1.5 124888,124889 3f4tA 226 34.49 2d5rB 116 37.72 d.370.1.1 146467 2oh3A 167 41.09 a.25.1.8 148774 3f4sA 226 41.24 1vz0A 230 44.19 a.4.14.1,d.268.1.1 108929,108930 1w68A 390 47.52 a.25.1.2 109216 1mtyB 384 49.81 a.25.1.2 16740 3bfxA 296 49.94 c.37.1.5 155239 3ee4A 323 50.22 2ct9A 208 51.33 3dhzA 329 54.36 a.25.1.2 157741 1r5jA 337 56.84 c.77.1.5 97097 1mtyD 512 57.26 a.25.1.2 16742 3f4rA 226 58.42 3dhiA 500 60.55 2o2cA 613 60.56 1vi0A 206 61.28 a.4.1.9,a.121.1.1 100720,100721 2in3A 216 65.36 2sasA 185 67.12 a.39.1.5 17258 1wy0A 342 70.40 2id3A 225 71.68 a.4.1.9,a.121.1.1 137261,137262 1pa2A 306 72.26 a.93.1.1 18693 1bedA 181 74.90 c.47.1.13 90330 1qgjA 300 77.16 a.93.1.1 18691 1fvkA 189 81.87 c.47.1.13 90351 2je8A 848 82.20 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1wpaA 114 82.30 h.4.17.1 121145 1acvA 189 83.33 c.47.1.13 90328 1vqrA 297 85.75 a.211.1.3 114015 2bptA 861 86.69 a.118.1.1 128951 1vchA 175 86.88 c.61.1.1 119980 1u7pA 164 88.31 c.108.1.17 113095